Thursday, March 26, 2026 (Workshops)
Friday, March 27, 2026 (Symposium)
Open to Stony Brook University Faculty, Staff, and Graduate Students. Hosted by the Center for Excellence in Learning and Teaching, Office of the Provost.
Thursday, March 26, 2026
Workshop: AI Tools and Techniques
- Open to all faculty & staff
- Hands-on, exploratory
- Registration only limited to the size of the room
- Location: In-person, TBD
- Time: 10 AM - 12 PM
- Registration required
Friday, March 27, 2026
Keynote: Teaching and Thinking with AI
- Faculty, TAs, postdocs, and academic staff
- In-person on-campus conference venue
- Location: SAC Balroom
- Time: 9 AM - 3 PM
- Registration required
Keynote Speaker: José Antonio Bowen
José Antonio Bowen has been leading innovation and change for over 40 years at Stanford, Georgetown and the University of Southampton (UK), as a dean at Miami University and SMU and as President of Goucher College. Bowen has worked as a musician with Stan Getz, Dave Brubeck, and many others and his symphony was nominated for the Pulitzer Prize in Music (1985).
Bowen holds four degrees from Stanford and has written over 100 scholarly articles and books, including the Cambridge Companion to Conducting (2003), Teaching Naked (2012 and the winner of the Ness Award for Best Book on Higher Education), Teaching Naked Techniques with C. Edward Watson (2017) and Teaching Change: How to Develop Independent Thinkers using Relationships, Resilience and Reflection (Johns Hopkins University Press, 2021).
Bowen has appeared in The New York Times, Forbes, The Wall Street Journal, and has three TED talks. Stanford honored him as a Distinguished Alumni Scholar (2010) and he has presented keynotes and workshops at more than 300 campuses and conferences 46 states and 17 countries around the world. In 2018, he was awarded the Ernest L. Boyer Award (for significant contributions to American higher education). He is a senior fellow for the American Association of Colleges and Universities.
Register here.
You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.
Abstract: Designing custom proteins could revolutionize medicine and materials, but it remains an immense scientific challenge. Our work uses large-scale AI foundation models to generate novel proteins tailored to bind specific small molecules. Each AI-generated design is passed through a rigorous, multi-stage validation pipeline to ensure it is biophysically realistic. A key innovation is fine-tuning our model with data from molecular dynamics (MD) simulations, exposing it to the conformational dynamics and energetics of protein-ligand binding. This physics-aware training results in novel protein designs with enhanced stability and more effective binding capabilities.
Bio: Xin Dai is an Assistant Computational Scientist in the Artificial Intelligence Department of the CDS. His work centers on AI for Science with a strong focus on computational biology. He earned his PhD in Physics from Tsinghua University.
Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.
Location: CDS, Bldg. 725, Training Room
Join Zoom Meeting: https://bnl.zoomgov.com/j/1604383624?pwd=ffQ5cUPNxTI7nzClKQO6cnsNbhF9Vf.1
Meeting ID: 160 438 3624
Passcode: 558449
You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.
Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.
Learning Generalizable Program and Architecture Representations for Performance Modeling
Abstract: Performance modeling is an essential tool in many areas of computer science and engineering. However, existing performance modeling approaches have limitations, such as high computational cost, narrow flexibility, or restricted accuracy/generality. To address these limitations, this talk introduces PerfVec, a novel deep learning-based performance modeling framework that learns high-dimensional and independent/orthogonal program and microarchitecture representations. Once learned, a program representation can be used to predict its performance on any microarchitecture, and likewise, a microarchitecture representation can be applied in the performance prediction of any program. Additionally, PerfVec yields a foundation model that captures the performance essence of instructions, which can be directly used by developers in numerous performance modeling-related tasks without incurring its training cost. The evaluation demonstrates that PerfVec is more general and efficient than previous approaches. This talk will also introduce how PerfVec's design principles can benefit broader research areas.
Biography: Lingda Li is a computer scientist at Brookhaven National Laboratory. He is generally interested in computer architecture and programming model research, with focus on simulation/modeling, memory systems, and machine learning. Before joining BNL, he worked at the Department of Computer Science of Rutgers University as a postdoc to carry out GPGPU research. He obtained a PhD in computer architecture from the Microprocessor Research and Development Center at Peking University.
Location: CDS, Bldg. 725, Training Room
Join ZoomGov Meeting: https://bnl.zoomgov.com/j/1605837856?pwd=kYqJs4bVBt4E0cMCWR6GXH3wxzOoiw.1
Meeting ID: 160 583 7856
Passcode: 161580
ABSTRACT: The state of our planet is not good. We have lost more than 60% of the world's wildlife. Stopping the decline remains a challenge, especially since acquiring appropriate knowledge is expensive, time consuming and risky. Visual observations following the fates of a few individuals was the currency of the realm. But GPS technology and now machine learning provide a non-invasive scalable alternative. Photographs, taken by field scientists, tourists, automated cameras and incidental photographers, are the most abundant source of data on wildlife today. Wildbook, a project of tech for conservation coordinated by a non-profit Wild Me, is an autonomous computational system that starts from massive collections of images and, by detecting various species of animals and identifying individuals, combined with sophisticated data management, turns them into high-resolution information databases, enabling scientific inquiry, conservation and citizen science.
BIO: Dan Rubenstein is the Class of 1877 Professor of Zoology. He is currently Director of Princeton's Environmental Studies Program and is former Chair of Princeton University's Department of Ecology and Evolutionary Biology and Director of Princeton's Program in African Studies. He is a behavioral ecologist who studies how environmental variation and individual differences shape social behavior, social structure, sex
roles and the dynamics of populations. He has special interests in all species of wild horses, zebras and asses, and has done field work on them throughout the world identifying rules governing decision-making, the emergence of complex behavioral patterns and how these understandings influence their management
and conservation. In Kenya he also works with pastoral communities to develop and assess impacts of various grazing strategies on rangeland quality, wildlife use and livelihoods. He has also developed a scout program for gathering data on Grevy's zebras and created curricular modules for local schools to raise awareness about the plight of this endangered species. He engages people as 'Citizen Scientists' and has recently extended his work to measuring the effects of environmental change, including issues pertaining to the global commons
and changes wrought by management and by global warming, on behavior.
Chao has shared some of his research with the CG Group previously, and this will be a great opportunity to learn more about this exciting research area related to computational geometry/
Time: Friday, March 12, 2pm-3pm
Place: Zoom
https://stonybrook.zoom.us/my/
Title: Learning with Topological Information - Image Analysis and Label Noise
Speaker: Prof. Chao Chen (SBU)
Abstract: Modern machine learning faces new challenges. We are
analyzing highly complex data with unknown noise. Topology provides
novel structural information to model such data and noise. In this
talk, we discuss two directions in which we are using topological
information in the learning context. In image analysis, we propose a
topological loss to segment and to generate images with not only
per-pixel accuracy, but also topological accuracy. This is necessary
in analysis of images of fine-scale biomedical structures such as
neurons, vessels, etc. Extracting these structures with correct
topology is essential for the success of downstream
analysis. Meanwhile, we discuss how to use topological information to
train classifiers robust to label noise. This is important in practice
especially when we are using deep neural networks which tend to
overfit noise. These results have been published in NeurIPS, ECCV,
ICML and ICLR.
This workshop focuses on how to use AI Deep Research for investigating a topic. Go from a basic search to utilize Gemini and Perplexity to find information. We will show you our steps to evaluate and gain deeper insights from the results.
Register here for the online session.