Join us for presentations, a keynote speaker, a Q&A session, and a chance to network with faculty and industry professionals

Hosted by College of Engineering and Applied Sciences, Long Island Manufacturing Extension Partnership (LIMEP), and Center of Excellence Wireless and Information Technology (CEWIT)

Register here

Location: Stony Brook University, CEWIT Room 152

Abstract: Computational pathology has revolutionized cancer diagnosis and research through the analysis of digitized whole slide images (WSIs). However, their giga-pixel size creates two intertwined bottlenecks: computational inefficiency, as prohibitive GPU memory makes standard end-to-end (E2E) training infeasible, and label inefficiency, as expert annotation is tedious and expensive. This dissertation confronts both challenges through novel architectures, training paradigms, and self-supervised learning methods for efficient WSI analysis.
To improve computational efficiency, this dissertation first introduces a locally supervised learning paradigm that enables E2E training on entire WSIs by partitioning a network into gradient-isolated modules, circumventing the memory bottleneck of backpropagation. Second, it presents Prompt-MIL, a parameter-efficient fine-tuning framework training only a few prompts to guide large pre-trained models, reducing trainable parameters, memory, and training time. Third, this work proposes 2DMamba, the first intrinsic Mamba architecture that preserves the crucial 2D spatial structure of images, overcoming the spatial discrepancy in 1D models. Fourth, it presents Locally Bi-directional Mamba (LBMamba), whose hardware-aware local backward scan integrates bi-directional scanning into a single forward pass, improving the throughput-performance trade-off of Mamba models.
To improve label efficiency, this dissertation proposes a precise location based matching strategy for self-supervised dense contrastive learning, which allows a local patch in one augmented view to match multiple overlapping patches in another, producing more accurate correspondences and superior features for dense prediction tasks like segmentation and detection. Additionally, to better scale multi-channel cell imaging modalities, this dissertation introduces ChannelSFormer, a channel-agnostic vision transformer that disentangles spatial and channel-wise reasoning through divided attention and channel class token, enabling effective representation learning across variable channel configurations in both self-supervised and supervised settings.
In summary, this dissertation presents a holistic investigation into the efficiency bottlenecks in computational pathology. Through these combined contributions in model architecture, training paradigms, and self-supervised learning, this work establishes a more scalable, efficient, and powerful computational framework for analyzing giga-pixel pathology images.

Speaker: Jingwei Zhang

Location: NCS 220

Zoom: https://stonybrook.zoom.us/j/93175806292?pwd=xbtxnQyYGoThz5B1DyJxJxPF9lxiJE.1
Meeting ID: 931 7580 6292
Passcode: 314091
The overall purpose of this seminar is to bring together people with interests in Computer Vision theory and techniques and to examine current research issues. This course will be appropriate for people who already took a Computer Vision graduate course or already had research experience in Computer Vision. To enroll in this course, you must either: (1) be in the PhD program or (2) receive permission from the instructors.

Each seminar will consist of multiple short talks (around 10 minutes) by multiple people. Students can register for 1 credit for CSE 656. Registered students must attend and present a minimum of 2 or 3 talks. Everyone else is welcome to attend. Fill in https://forms.gle/pCVXovgfMfQwGqG38 to subscribe to our mailing list for further announcement.
The annual conference on Neural Information Processing Systems is a multi-track interdisciplinary annual meeting that includes invited talks, demonstrations, symposia, and oral and poster presentations of refereed papers. Along with the conference is a professional exposition focusing on machine learning in practice, a series of tutorials, and topical workshops that provide a less formal setting for the exchange of ideas.

For more information and registration, visit the official website.

You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.

Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.

Machine Learning for Seismic Low Frequency Extrapolation

Abstract: The cycle skipping problem that plagues seismic inversion can be mitigated by utilizing low-frequency seismic data, which captures the kinematics of wave propagation, in conjunction with a reasonable initial velocity model. However, seismic sources and receivers are band-limited and cannot provide signals down to 0 Hz. To improve solution of the seismic inverse problem one can synthesize the missing low-frequency content by solving a regression problem using machine learning (ML). The recorded high-frequency (HF) seismic data is the input and the ML models are trained to predict the missing low-frequency (LF) seismic data. Deep learning models utilizing convolutional neural networks (CNNs) and generative adversarial networks (GANs) demonstrate important capabilities for LF extrapolation. However, such models require powerful hardware and careful training. We explore the feasibility of using less costly ML models such as a random forest, Gaussian process surrogates, and gradient boosting as alternatives to computationally expensive deep learning models.

Biography: Sue Minkoff is Chair of Applied Mathematics at Brookhaven National Laboratory. From 2012-2024 she was a Professor of Mathematical Sciences and an Affiliated Professor in the Departments of Sustainable Earth Systems Sciences and Science and Mathematics Education at the University of Texas at Dallas. From 2000-2012 she served on the faculty in the Department of Mathematics and Statistics at the University of Maryland, Baltimore County. She received her doctorate in Computational and Applied Mathematics from Rice University. From 1995-1997 she was a National Science Foundation-Industrial postdoc joint with the University of Texas at Austin and British Petroleum, and from 1997-2000 she held the von Neumann Fellowship in the Mathematics Department at Sandia National Labs. In 2000 Minkoff was promoted to Senior Member of the Technical Staff in Sandia's Geophysics Department. Minkoff's research interests include scientific computing, inverse problems, uncertainty quantification and digital twins modeling, Earth science, and photonics.

Location: CDS, Bldg. 725, Training Room

Join ZoomGov Meeting: https://bnl.zoomgov.com/j/1606848158?pwd=miUtq7OkYL5SNkjbgVb19teZPNennd.1

Meeting ID: 160 684 8158
Passcode: 068399

Do you spend hours manually reformatting, copy-pasting and cleaning up data? Perhaps you've tried using AI to do the work for you; the problem is, how do you know what AI did? There's a better way: Excel has a built-in auditable data tool called Power Query--it shows a list of every change made, and we can use Gemini AI to write the underlying code!

Register here to join our hands-on exploration of this powerful method online (no coding experience required).
The North East AI Agents Day Organizing Committee invites you to '2026 AI Agents Day.'

The goal of this workshop is to offer a comprehensive overview of AI agents, bring ML, Systems, and HCI research communities together to share progress, discuss common problems and evaluation setups, and identify opportunities for collaboration. We aim to bring together attendees from diverse disciplines to foster interdisciplinary collaboration and discuss open research questions.

Location: Jane Street Offices, New York

Register here.

Abstract: Millions of individuals living in disadvantaged communities are burdened by poverty, illegal drug activities, health concerns, and the lack of reliable and affordable access to facilities (e.g., schools, hospitals, and transit stations). To address these societal problems efficiently with broad support, initiatives have called to engage agents (e.g., residents, community leaders, or stakeholders) and consider their preferences on community improvement decisions to make collective community decisions. In this talk, we will focus on our ongoing AI-empowered collective decision-making approaches to improve the accessibility of individuals to facilities by (a) locating facilities to provide essential services and (b) strengthening existing infrastructures via structural modifications (e.g., constructing new roads, bridges, multi-use paths, or shuttle services) subject to individuals' preferences on the locations of the facilities and which communities to improve access, respectively. In particular, we will discuss our (theoretical and algorithmic) studies on modeling these approaches under several settings (e.g., accounting for fairness and agent preferences) and designing fair, transparent, strategy proof, and (approximately) optimal mechanisms to elicit (true) individual preferences and determine collective community decisions in order to improve facility accessibility. Finally, we will discuss other ongoing and future collective decision-making efforts in urban planning and public health (i.e., our recent studies on substance use research) to improve communities.

Bio: Hau Chan is an assistant professor in the School of Computing at the University of Nebraska-Lincoln. He received his Ph.D. in Computer Science from Stony Brook University in 2015 and completed three years of Postdoctoral Fellowships, including at the Laboratory for Innovation Science at Harvard University in 2018. His main research lies in multi-agent aspects of AI for Society and Social Good, focusing on developing modeling and algorithmic foundations for tackling societal problems involving agents and predicting agent behavior in societal contexts, leveraging AI, game theory, mechanism design, and machine learning to better inform policymaking and (collective) decision-making. His team has been addressing societal challenges and fairness issues in various domains, including security (e.g., reducing vulnerability), public health (e.g., reducing substance use and homelessness), and urban planning (e.g., improving accessibility to public facilities), collaborating with domain experts. His research has been supported by NSF, NIH, and USCYBERCOM. He has received several Best Paper Awards at SDM and AAMAS and distinguished/outstanding SPC/PC member recognitions at IJCAI and WSDM. He has given tutorials and talks on computational game theory and mechanism design at venues such as AAMAS and IJCAI, including an Early Career Spotlight at IJCAI 2022. He has served as co-chairs for the AI and Social Good Track, Demonstration Track, Student Activities, Doctoral Consortium, Job Fair, Scholarships, Finance, and Diversity & Inclusion Activities at AAAI, AAMAS, and IJCAI.

Location: Old Computer Science, room 1310