📍 Location: Frey 102
📅 Date: Monday, Nov 11
⏰ Time: 12 PM - 1:50 PM
Scan the QR code or register in the link.
You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.
Abstract: Designing custom proteins could revolutionize medicine and materials, but it remains an immense scientific challenge. Our work uses large-scale AI foundation models to generate novel proteins tailored to bind specific small molecules. Each AI-generated design is passed through a rigorous, multi-stage validation pipeline to ensure it is biophysically realistic. A key innovation is fine-tuning our model with data from molecular dynamics (MD) simulations, exposing it to the conformational dynamics and energetics of protein-ligand binding. This physics-aware training results in novel protein designs with enhanced stability and more effective binding capabilities.
Bio: Xin Dai is an Assistant Computational Scientist in the Artificial Intelligence Department of the CDS. His work centers on AI for Science with a strong focus on computational biology. He earned his PhD in Physics from Tsinghua University.
Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.
Location: CDS, Bldg. 725, Training Room
Join Zoom Meeting: https://bnl.zoomgov.com/j/1604383624?pwd=ffQ5cUPNxTI7nzClKQO6cnsNbhF9Vf.1
Meeting ID: 160 438 3624
Passcode: 558449
Bio: Jieshu Wang is a Postdoctoral Research Scholar at Arizona State University (ASU), focusing on the social dimensions of artificial intelligence (AI). With a background in engineering, economics, communication, and science and technology studies, she examines how AI both shapes and is shaped by broader societal forces. Her research employs interdisciplinary methods to explore the social, political, and economic factors influencing AI development, as well as its role in innovation, the economy, the future of work, climate change mitigation, and popular culture. Jieshu holds a Ph.D. in Human and Social Dimensions of Science and Technology from ASU. She is also a science book translator and has translated six books.
Location: Old Computer Science, room 1310
The University's Main Commencement Ceremony will take place on Friday, May 23, 2025 at 11 am at Kenneth P. LaValle Stadium. Gates open at 10 am.
All guests need a valid ticket to enter LaValle Stadium - no exceptions. Children age 1 and older require a ticket. Seating is first-come, first-served.
Register here.
Time: Mar 17, 2021 10:00 AM Eastern Time (US and Canada)
Join Zoom Meeting
https://stonybrook.zoom.us/j/
Meeting ID: 936 1464 4178. Passcode: 965936
Natural Language Understanding and Semantic Parsing
(Partly joint work with former colleagues at Elemental Cognition)
Semantic parsing refers to the task of determining the propositional content of language: who did what to whom. It is part of the larger task of natural language understanding (NLU). I will start out by discussing what full NLU means, and argue that we are still far away, as a field, from solving full NLU, or even from knowing how to evaluate it.
In the second part of the talk, I will situate semantic parsing in the context of several other NLU subtasks. Typically, the target representation of semantic parsing uses an ontology (such as PropBank or FrameNet). Semantic parsing includes the subtasks of word sense disambiguation, argument detection, and argument role labeling. I will discuss choices among possible target ontologies. I will justify why we created a new ontology, Hector, based on FrameNet and the lexical resource NOAD, and explain some of its characteristics.
In the third part of the talk, I will present experiments we performed using transformer models. We obtain best results using a two-phase model, in which we first choose the frame, and then, given the frame, choose the arguments. We encode the problem for both tasks using indices in the sentence. While we develop the parser for our new ontology Hector, this approach also beats the state of the art for FrameNet and PropBank parsing.Biography: I am a professor in the Department of Linguistics at Stony Brook University with a joint appointment in IACS.
Until recently, I was a research scientist at Elemental Cognition. Elemental Cognition is working on deep natural language understanding.
I got my PhD with Aravind Joshi at the University of Pennsylvania in 1994. I have worked at CoGenTex, and at AT&T Labs -- Research, and for many years I was a research scientist at Columbia University in the Center for Computational Learning Systems.
The seminar will be jointly taught by Prof. Dimitris Samaras (samaras@cs.stonybrook.edu).
The overall purpose of this seminar is to bring together people with interests in Computer Vision theory and techniques and to examine current research issues. This course will be appropriate for people who already took a Computer Vision graduate course or already had research experience in Computer Vision.
To enroll in this course, you must either: (1) be in the Ph.D. program or (2) receive permission from the instructors.
Each seminar will consist of multiple short talks (around 15 minutes) by multiple students. Students can register for 1 credit for CSE656. Registered students must attend and present a minimum of 2 talks. Registered students must attend in person. Up to 3 absences will be excused. Everyone else is welcome to attend.
Please note: Exceptionally, the first meeting on 1/28 will be in NCS 120.