AI Innovation Institute

Virtual Talk: Contextual Modeling for Natural Language Understanding, Generation and Grounding by Rui Zhang

Zoom link to come.

Abstract: Natural language is a fundamental form of information and communication. In both human-human and human-computer communication, people reason about the context of text and world state to understand language and produce language response. In this talk, I present 
several deep-neural-network-based systems that first understand the meaning of language grounded in various contexts where the language is used, and then generate effective language responses in different forms for information access and human-computer communication. First, 
I will introduce Speaker Interaction RNNs for addressee and response selection in multi-party conversations based on explicit representations for different discourse participants. Then, I will 
present a text summarization approach for generating email subject lines by optimizing quality scores in a reinforcement learning framework. Finally, I will show an editing-based multi-turn SQL query generation system towards intelligent natural language interfaces to databases. 

Bio: Rui Zhang is a final-year PhD student at Yale University advised by Professor Dragomir Radev. His research interest lies in various natural language processing problems in understanding, generation, and grounding. He has been working on (1) End-to-End Neural Modeling for Entities, Sentences, Documents and Multi-party Multi-turn Dialogues, (2) Text Summarization for Emails, News and Scientific Articles, (3) Cross-lingual Information Retrieval for Low-Resource Languages, (4) Context-Dependent Text-to-SQL Semantic Parsing in Human-Computer Interaction. Rui Zhang has published papers and served as Program Committee members at top-tier NLP and AI conferences including ACL, NAACL, EMNLP, AAAI and CoNLL. During his PhD, he has done research internships at IBM Thomas J. Watson Research Center, Grammarly Research and Google AI. He was a graduate student at the University of Michigan and got his Bachelor's degrees at both the University of Michigan and Shanghai Jiao Tong University from the UM-SJTU Joint Institute.

Abstract: Anxiety disorders are characterized by persistent and excessive form of fear and worry that interferes with daily functioning, distinguishing it from the adaptive anxiety that helps individuals respond to challenges. Despite affecting millions worldwide and costing a significant public health burden, anxiety disorders still remain underdiagnosed than actual prevalence due to lack of understanding and stigmatization. Leveraging machine learning (ML) and natural language processing (NLP) approaches can help bridge this gap by enabling scalable and accessible mental health assessments, offering a data-driven understanding of anxiety from individual and societal perspectives, and shedding light on societal stigmas toward mental health conditions. At the same time, advancing ML and NLP techniques for anxiety research presents unique technical challenges, such as effectively modeling linguistic markers of anxiety and ensuring interpretability in mental health predictions.

This dissertation investigates anxiety from both individual and societal perspectives using artificial intelligence. First, we explore individual manifestations of anxiety through three methodological advancements: (1) integrating contextual and discourse-level embeddings to improve language-based anxiety prediction using Facebook posts and selfreported surveys; (2) enhancing cognitive dissonance detection in Twitter dataset with transfer learning and active learning; and (3) developing longitudinal representation learning approaches that achieve both predictive utility and interpretability of adolescent psychopathology. Finally, we extended our analysis to societal dimension of anxiety by identifying and categorizing social norms expressed in Reddit and Twitter posts and examining their associations with anxiety. By combining data-driven methods with psychological insights, this work studies anxiety from various angles - capturing both individual experiences and societal influences - offering a step toward a more comprehensive understanding of its causes and manifestations.

Speaker: Swanie Juhng

https://stonybrook.zoom.us/j/98905245099?pwd=M7rI7aNfNio281qyebEUdNPBcSiK7Y.1

The Hudson River Estuary (HRE) and New York Bight (NYB) are closely connected, with HRE acting as crucial areas where many NYB marine species spawn and grow. Understanding how these biotic and abiotic environments interact, especially with rapid climate change, is key to better managing fisheries and conserving ecosystems. To better understand the HRE-NYB ecosystem, we develop a comprehensive ecosystem model that links physical and biological processes. Using data from long-term monitoring programs, we analyze ecological patterns and identify key factors regulating the ecosystem. We use this information to develop a model that mimics the food web from tiny plankton to large predators in the ecosystem. This model can help us better understand how changes in the environment, like rising temperatures, and human activities such as fishing affect marine lives and ecosystem over time. The insights from this model can support smarter fisheries management and efforts to conserve marine ecosystems in the HRE-NYB region.

IACS Student Seminar Speaker: Xiangyan Yang, Dept. of Applied Math & Statistics

Location: IACS Seminar Room or Zoom

Join Zoom Meeting: https://stonybrook.zoom.us/j/91650247483?pwd=fvAGEwadplJh7jFC5RWcdvZ5NWPJth.1
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All are welcome to attend BMI grand rounds talk by Dr. Le Lu on 04/14. 

Le Lu, Ph.D 
Executive Director, PAII Inc 
Johns Hopkins University
IEEE Fellow, MICCAI Board Member


Time: Wednesday, April 14, 2021 3:00 pm - 4:00 pm 

Zoom Meeting 
https://stonybrook.zoom.us/j/95617197636?pwd=KytzZ2pVRG9SZGpKZUtpNXJISjNjZz09 
Meeting ID: 956 1719 7636 Passcode: 924293

Title: 
In Search of Effective and Reproducible Clinical Imaging Biomarkers for Population Health and Oncology Applications of Screening, Diagnosis and Prognosis

Bio: 
Le Lu received a PhD in 2007 from Johns Hopkins University. During his first six years at Siemens, he made significant contributions to the company's CT colonography and Lung CAD product lines. From 2013 to 2017, Dr. Lu served as a staff scientist in the Radiology and Imaging Sciences department of the National Institutes of Health Clinical Center. He then went on to found Nvidia's medical image analysis group and he held the position of senior research manager until June 2018. Since then, he has been the Executive Director at PAII Inc., Bethesda Research lab, Maryland, USA which has become one of the leading industrial research labs in medical imaging. He was the main technical leader for two of the most-impactful public radiology image dataset releases (NIH ChestXray14, NIH DeepLesion 2018). He won NIH Clinical Center Director Award in 2017, NIH Mentor of the year award in 2015, and won numerous best paper awards in MICCAI and RSNA from 2016 to 2020 (over 10000 citations). In 2021, He was elected into IEEE Fellow class cited for his contribution to machine learning for cancer detection and diagnosis, and MICCAI society board member (MICCAI-Industry Workgroup Chair). He is currently an Associate Editor for IEEE Trans. Pattern Analysis and Machine Intelligence and IEEE Signal Processing Letters. He has served as an Area Chair for recent MICCAI, AAAI, CVPR, WACV, ICIP and ICHI conferences for 14 times.

Abstract: 
This talk will first give an overall on the work of employing deep learning to permit novel clinical workflows in two population health tasks, namely using conventional ultrasound for liver steatosis screening and quantitative reporting; osteoporosis screening via conventional X-ray imaging and AI readers. These two tasks were generally considered as infeasible tasks for human readers, but as proved by our scientific and clinical studies and peer-reviewed publications, they are suitable for AI readers. AI can be a supplementary and useful tool to assist physicians for cheaper and more convenient/precision patient management. Next, the main part of this talk describes a roadmap on three key problems in pancreatic cancer imaging solution: early screening, precision differential diagnosis, and deep prognosis on patient survival prediction. (1) Based on a new self- learning framework, we train the pancreatic ductal adenocarcinoma (PDAC) segmentation model using a larger quantity of patients (≈1,000, four institutions), with a mix of annotated/unannotated venous or multi-phase CT images. Pseudo annotations are generated by combining two teacher models with different PDAC segmentation specialties on unannotated images, and can be further refined by a teaching assistant model that identifies associated vessels around the pancreas. Our approach makes it technically feasible for robust large-scale PDAC screening from multi-institutional multi-phase partially-annotated CT scans. (2) We propose a holistic segmentation-mesh classification network (SMCN) to provide patient-level diagnosis, by fully utilizing the geometry and location information. SMCN learns the pancreas and mass segmentation task and builds an anatomical correspondence-aware organ mesh model by progressively deforming a pancreas prototype on the raw segmentation mask. Our results are comparable to a multimodality clinical test that combines clinical, imaging, and molecular testing for clinical management of patients with cysts. (3) Accurate preoperative prognosis of resectable PDACs for personalized treatment is highly desired in clinical practice. We present a novel deep neural network for the survival prediction of resectable PDAC patients, 3D Contrast-Enhanced Convolutional Long Short-Term Memory network (CE- ConvLSTM), to derive the tumor attenuation signatures from CE-CT imaging studies. Our framework can significantly improve the prediction performances upon existing state-of-the-art survival analysis methods. This deep tumor signature has evidently added values (as a predictive biomarker) to be combined with the existing clinical staging system.

More information can be found at:
https://bmi.stonybrookmedicine.edu/sites/default/files/Lu_le_04_14.pdf

CSE 600 Seminar Series | Fall 2025



Abstract:

We often talk about AI as if it begins with a dataset and ends with an application. But behind every model lie two sets of actors who are rarely acknowledged in technical documentation: the workers who train AI systems and the researchers who try to make sense of them. This talk brings both groups into view.
Dr. Ben Zhang will offer an on-the-ground examination of the prevailing values and invisible labor that underpin commercial AI production and data production. Drawing on ethnographic research inside AI data annotation centers in China, he introduces the concept of precision labor to unpack the labor dimension of constructing, managing, and performing technical accuracy. This concept highlights the hidden and excessive labor required to reconcile the ambiguity and uncertainty involved in AI training. A precision labor lens challenges the legitimacy and sustainability of the relentless pursuit of technical accuracy, raising new questions about its consequences and implications.
On the other end of the pipeline, as LLMs become embedded in society, social scientists like Dr. Jieshu Wang is scrutinizing their potential biases while employing them as research tools. She will present her recent work auditing LLM responses across different contexts, revealing that LLMs exhibit varying levels of environmental awareness and disproportionately reward institutional prestige in peer-review simulations. She also demonstrates how LLMs can serve as useful tools in social-science pipelines, e.g., extracting location information, inferring demographics, parsing citations, mapping social networks, and analyzing occupational data.
By placing these two worlds side by side - the labor of training AI and the scholarly efforts to study it - we show why responsible AI should go beyond the deployment phase - emphasizing fairness audits, and model explainability. It requires reimaging the values, labor regimes, and social science practices that shape AI systems from annotation to analysis.


Bios:

Dr. Jieshu Wang is an interdisciplinary researcher studying the human and social dimensions of artificial intelligence (AI) and how people can thrive in an AI-integrated future. She combines computational methods with qualitative insights to trace technology trends and understand their broader societal impact. She earned her Ph.D. in Human and Social Dimensions of Science and Technology from Arizona State University, after earlier degrees in Civil Engineering, Economics, and Science and Technology Studies. She has also worked as a patent examiner, an editor at a popular science magazine, and co-founded Synced (机器之心), an AI-focused media company in China. Her research looks both backward and forward. Backward-looking, she examines how AI are created, who creates them, and who is missing from the process. Forward-looking, she studies how AI is transforming the way we live, connect, invent, work, and adapt, as well as how AI might help address challenges such as climate change and workforce transitions.
Dr. Ben Zhang is an Assistant Professor in the Department of Technology. His research explores the production and sociotechnical impacts of AI systems in critical areas such as work, health, and sustainability. Drawing from his background in Human-Computer Interaction (HCI), Human-Centered AI, and Science and Technology Studies (STS), he employs a life-cycle-centered approach to holistically examine the promises and harms of these systems and to inform the design of responsible AI infrastructures across their development, deployment, and governance. Ben received his Ph.D. in Information Science from the University of Michigan. Ben's work has been supported by competitive awards and fellowships, including the University of Michigan Rackham Predoctoral Fellowship and the Weizenbaum Fellowship. His research has appeared in premier computing venues, including ACM CHI, ACM CSCW, and AAAI ICWSM.

Location: NCS 120

AI/ML Working Group Seminar

Time/Date: 12:00 PM ET, Tuesday, March 1st, 2022

Seminar Speaker: Yen-Chi (Sam) Chen, CSI, Brookhaven National Laboratory

Title: When reinforcement learning meets quantum computing

Abstract: Recently, reinforcement learning (RL) has demonstrated
various applications with superhuman performance such as mastering the
game of Go.  Meanwhile, the development of quantum computing hardware
shed light on building practical quantum applications to tackle
previously unsolved problems. What will happen if we combine these two
fascinating techniques? In this talk, I will present the recent
progress in quantum RL as well as using classical RL to help certain
tasks in quantum computing.



Host: Meifeng Lin, Computational Science Initiative

_______________________________________________

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CSE 600 Talk: Squeezing Software Performance via Eliminating Wasteful Operations presented by Xu Liu

ABSTRACT: Inefficiencies abound in complex, layered software. A variety of inefficiencies show up as wasteful memory operations, such as redundant or useless memory loads and stores. Aliasing, limited optimization scopes, and insensitivity to input and execution contexts act as severe deterrents to static program analysis. Microscopic observation of whole executions at instruction- and operand-level granularity breaks down abstractions and helps recognize redundancies that masquerade in complex programs. In this talk, I will describe various wasteful memory operations, which pervasively exist in modern
software packages and expose great potential for optimization. I will discuss the design of a fine-grained instrumentation-based profiling framework that identifies wasteful operations in their contexts, which guides nontrivial performance improvement. Furthermore, I will show our recent improvement to the profiling framework by abandoning
instrumentation, which reduces the runtime overhead from 10x to 3% on average. I will show how our approach works for native binaries and various managed languages such as Java, yielding new performance insights for optimization.

BIO: Xu Liu is an assistant professor in the Department of Computer Science at College of William & Mary. He obtained his PhD from Rice University in 2014 and joined the College of William & Mary in the same year. Prof. Liu works on building performance tools to pinpoint and optimize inefficiencies in HPC code bases. He has developed several open-source profiling tools, which are used worldwide at universities, DOE national laboratories and industrial companies. Prof. Liu has published a number of papers in high-quality venues. His papers received Best Paper Award at SC'15, PPoPP'18, PPoPP'19 and ASPLOS'17 Highlights, as well as Distinguished Paper Award at ICSE'19. His recent ASPLOS'18 paper has been selected as ACM SIGPLAN Research Highlights in 2019 and nominated for CACM Research Highlights. Prof. Liu is the receipt of 2019 IEEE TCHPC Early Career Researchers Award for Excellence in High Performance Computing. Prof. Liu served on the program committee of conferences such as SC, PPoPP, IPDPS, CGO, HPCA and ASPLOS.