Language shared online through social media or messaging reflects people's thoughts and emotions. Processing this data with Natural Language Processing (NLP) and machine learning can reveal mental health and psychological traits. For example, analyzing Facebook posts enables me to predict depression before it is clinically diagnosed and highlight particular symptoms. At the population level, billions of geo-tagged Tweets can be used to monitor health risk patterns, including depression and anxiety trends across communities. Beyond assessment, I'm using Large Language Models (LLMs) to improve mental health care, including training therapists and assisting with Cognitive Behavioral Therapy. These applications of NLP and Al may lead to earlier and more effective interventions and improved access for underserved populations. Speaker: Johannes Eichstaedt, Ph.D. Assistant Professor, Psychology & Human-Centered Al, Stanford University
The overall purpose of this seminar is to bring together people with interests in Computer Vision theory and techniques and to examine current research issues. This course will be appropriate for people who already took a Computer Vision graduate course or already had research experience in Computer Vision. To enroll in this course, you must either: (1) be in the PhD program or (2) receive permission from the instructors. Each seminar will consist of multiple short talks (around 15 minutes) by multiple students. Students can register for 1 credit for CSE656. Registered students must attend and present a minimum of 2 talks. Everyone else is welcome to attend. Fill in https://forms.gle/q6UG9ygauLp2a8Po8 to subscribe to our mailing list for further announcement.
Abstract: Facial emotion understanding aims to recognize, represent, and interpret human affect from facial behavior, and it is important for affective computing, human-computer interaction, digital humans, and mental health assessment. Existing work has represented facial emotion through discrete emotion categories, continuous affective dimensions such as valence and arousal, facial landmarks or geometry, and more recently semantic or language-based emotion descriptors. With the development of deep learning, supervised facial expression recognition has achieved strong performance on benchmark datasets, while self-supervised learning, multimodal large language models, and controllable facial generation have introduced new ways to learn emotion-related facial representations from images, videos, text, audio, and speech. However, many current models still rely heavily on manually annotated emotion labels, third-party perception judgments, or multimodal contextual cues, making it difficult to determine how much emotional information is captured directly from facial behavior itself, especially in naturalistic and clinically meaningful settings. Because these limitations make it challenging to evaluate whether facial representations capture emotionally meaningful behavior in real-world interactions, we propose to study facial emotion understanding through the relationship between facial behavior and language-derived emotional expression in psychiatric interview videos. Using a large dataset of mental health interviews, we extract multiple types of facial representations, including Action Unit features from FaceReader and OpenFace, non-AU facial behavior features from OpenFace, and 3D facial representations from EMOCA and SMIRK. We train segment-aligned transformer regressors to predict language-derived emotional targets, including valence, arousal, and RoBERTa-derived semantic-affective features from transcript segments. The results show that all facial representations achieve meaningful predictive performance across MSE and Pearson correlation metrics in both within-participant and between-participant evaluation settings. This indicates that facial behavior encodes information related to linguistic emotion at multiple levels: moment-to-moment emotional variation within individuals and broader affective differences across individuals. These findings suggest that structured facial representations can support vision-based emotion understanding in naturalistic mental health interviews and motivate future work on self-supervised, personalized, and controllable facial emotion models.

Speaker: Shao-Yu Chang

Zoom: https://stonybrook.zoom.us/j/3679036240?omn=98419305450

You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes three short talks on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.

Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.

Speakers

Kriti Chopra, Computing & Data Sciences (CDS)
Thomas Flynn, Computing & Data Sciences (CDS)
Wenjie Liao, Chemistry Division

Tuesday, January 7, 2025, 12:00 pm -- CDS, Bldg. 725, Training Room

Join ZoomGov Meeting: https://bnl.zoomgov.com/j/1615289117?pwd=Hqkbj9itxWrFnkhZ8rQXHPInO2gxdF.1

Meeting ID: 161 528 9117
Passcode: 991382

Abstract: DeepSeek-R1-Zero has shown that reinforcement learning (RL) at scale can directly enhance the reasoning capabilities of LLMs without supervised fine-tuning. In this work, we critically examine R1-Zero-like training by analyzing its two core components: base models and RL. We investigate a wide range of base models, including DeepSeek-V3-Base, to understand how pretraining characteristics influence RL performance. Our analysis reveals that DeepSeek-V3-Base already exhibit ''Aha moment'', while Qwen2.5 base models demonstrate strong reasoning capabilities even without prompt templates, suggesting potential pretraining biases. Additionally, we identify an optimization bias in Group Relative Policy Optimization (GRPO), which artificially increases response length (especially for incorrect outputs) during training. To address this, we introduce Dr. GRPO, an unbiased optimization method that improves token efficiency while maintaining reasoning performance. Leveraging these insights, we present a minimalist R1-Zero recipe that achieves 43.3% accuracy on AIME 2024 with a 7B base model, establishing a new state-of-the-art.

Speaker: Md. Saqib Hasan

Location: CS2311
Abstract: Many foundation models for digital pathology have been released recently. Benchmarking available methods then becomes paramount to get a clearer view of the research landscape. For this reason, we introduce THUNDER, a tile-level benchmark for digital pathology foundation models, allowing for efficient comparison of many models on diverse datasets with a series of downstream tasks, studying their feature spaces and assessing the robustness and uncertainty of predictions informed by their embeddings. Such foundation models are often used as feature extractors and combined with Multiple Instance Learning (MIL) aggregators at downstream time. Such aggregation must be efficient and reliable. We will focus on two specific examples of this: (I) HistAug, a fast and efficient generative model for controllable augmentations in the latent space of foundation models to perform data augmentation for MIL, and (ii) CAR-MIL, a method based on counterfactual attention regularisation to improve the reliability of attention maps of MIL methods.

Short-bio: Pierre Marza is a Postdoctoral Researcher at CentraleSupelec in the Biomathematics team of the MICS lab, studying Computer Vision and Deep Learning for Medical Imaging, with a focus on Digital Pathology. Prior to this, he was a PhD student at INSA Lyon, in the LIRIS and CITI labs, advised by Christian Wolf, and co-advised by Laetita Matignon and Olivier Simonin. He studied Visual Navigation, Embodied AI, Spatial Reasoning, more specifically how to learn to represent 3D space, generalize to new environments and master diverse tasks from light supervision.

Location: NCS 220

Zoom: https://stonybrook.zoom.us/j/94798224254?pwd=CFraer25qnpORbJ14aAVHRwaSJOjJM.1
A talk by Jerome Zhengrong Liang entitled, Machine Learning from Original Images to Texture Patterns: A Paradigm Shift from Non-Medical Application to Medical Diagnosis. Abstract: Artificial intelligence (AI) research for medical diagnosis started soon after human began to use computer, initially called artificial neural network (ANN) and now convolutional neural network (CNN). ANN has been mainly explored to classify the experts' handcrafted features from the original (or raw) images, while CNN has been mainly explored directly on the raw images for both tasks of extracting abstract features and classifying the features. Experimental evidences have been shown that CNN can be trained by a large number of the raw images with experts' scores (or labels) to match or even surpass the experts' performance for both non-medical and medical diagnosis applications. However, the performances of the CNN models as well as the experts on medical diagnosis dropped dramatically when the labels of the raw images were replaced by the corresponding medical pathological reports. Accumulated medical knowledge reveals that the lesion heterogeneity is a footprint of lesion evolution and ecology, and the heterogeneity is an indicator of lesion progress and response to medical intervention. The heterogeneity can be reflected by the image contrast distribution (or texture patterns) across the lesion volume. Image textures have been shown as an effective descriptor of the lesion heterogeneity for computer-aided diagnosis. Can we map the raw images into texture patterns (or images) and train CNN to learn from the texture images? This question is the central theme of this presentation with application to CT Colonography or virtual colonoscopy, a game from AlphaGo to PolypGo. Bio: Jerome Zhengrong Liang, PhD, IEEE Fellow Imaging Research and Informatics Laboratory Department of Radiology, Stony Brook University

You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.

Abstract: Designing custom proteins could revolutionize medicine and materials, but it remains an immense scientific challenge. Our work uses large-scale AI foundation models to generate novel proteins tailored to bind specific small molecules. Each AI-generated design is passed through a rigorous, multi-stage validation pipeline to ensure it is biophysically realistic. A key innovation is fine-tuning our model with data from molecular dynamics (MD) simulations, exposing it to the conformational dynamics and energetics of protein-ligand binding. This physics-aware training results in novel protein designs with enhanced stability and more effective binding capabilities.

Bio: Xin Dai is an Assistant Computational Scientist in the Artificial Intelligence Department of the CDS. His work centers on AI for Science with a strong focus on computational biology. He earned his PhD in Physics from Tsinghua University.

Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.

Location: CDS, Bldg. 725, Training Room

Join Zoom Meeting: https://bnl.zoomgov.com/j/1604383624?pwd=ffQ5cUPNxTI7nzClKQO6cnsNbhF9Vf.1

Meeting ID: 160 438 3624
Passcode: 558449

CSE 600 Seminar Series | Fall 2025


Abstract: Vision-language models that see and describe the world are now part of our daily lives, from internet search and accessibility tools to content generation and automatic moderation. However, as these models grow and become more widely used, their limitations have also become increasingly visible. In particular, it has been shown that these models are unable to reliably perform complex tasks that require abstraction and compositional reasoning. For example, they struggle to decompose an image or text into entities, attributes, and relations, and then reason over new combinations of these elements. As a result, we see generated content full of hallucinations, privacy leaks in images, and different types of biases in the model outputs.In this talk, I will outline a research agenda that aims to build trustworthy vision-language models in the age of generative AI. I will begin with compositional reasoning: how natural language inference can be used to decompose complex instructions and captions into atomic, verifiable statements, improving both evaluation and model behavior on tasks that require multi-step reasoning. I will then discuss how synthetic data and simulated environments can be used to train more reliable models, and how they can also stress-test models beyond standard benchmarks, revealing when models drop attributes, break object relations, or fail under distribution shifts. I will also share recent work on using hallucination correction as a signal to improve video-language alignment, and on privacy-preserving image understanding for blind and low-vision users. I will conclude with possible ways we can systematically probe, debug, and repair these models, turning synthetic perception into something we can trust in real-world deployments.



Speaker: Paola Cascante-Bonilla is a tenure-track Assistant Professor in the Department of Computer Science at Stony Brook University (SUNY). Before that, she was a Postdoctoral Associate at the University of Maryland Institute for Advanced Computer Studies (UMIACS), developing methods and metrics related to trustworthy machine learning. She received her Ph.D. in Computer Science at Rice University in 2024, working on Computer Vision, Natural Language Processing, and Machine Learning.Her research focuses on developing systems that enable compositional reasoning and common-sense inference through vision and language, while tackling issues such as cultural biases, data distribution, explainability, and trustworthy AI. Additionally, Cascante-Bonilla creates simulated environments for embodied agents to learn in a safe, controlled setting, aiming to facilitate effective collaboration and problem-solving for complex tasks by leveraging the implicit knowledge of large-scale pre-trained deep learning models.
Cascante-Bonilla is the recipient of the Ken Kennedy Institute SLB Graduate Fellowship (2022/23), she was selected as a Future Faculty Fellow by Rice's George R. Brown School of Engineering (2023) and as a Rising Star in EECS (2023).
Location: NCS 120