Abstract:

Recent advances in deep learning have significantly enhanced the capabilities of Natural Language Processing (NLP) and Vision-Language Models (VLMs). However, these advancements come with increased vulnerabilities, notably through backdoor attacks that pose severe security threats. This thesis addresses two critical dimensions of Trustworthy AI and Efficient Multimodal Representation Learning: (1) security through analyzing, detecting, and designing backdoor attacks in NLP and VLMs, and (2) efficiency through advanced multimodal representation methods tailored for clinical and medical imaging applications.

In the first dimension, we explore the internal mechanisms exploited by backdoor attacks, identifying the distinctive phenomenon of attention focus drifting in compromised transformer models, where trigger tokens consistently hijack attention. Leveraging these insights, we propose robust detection frameworks, including the attention-based Trojan detector (AttenTD) and a task-agnostic logit-based detection method (TABDet), achieving effective identification of backdoored NLP models across diverse tasks. We further introduce novel backdoor attack methodologies: the Trojan Attention Loss (TAL), enhancing attack efficiency and stealth through direct attention manipulation, and BadCLM, demonstrating critical vulnerabilities in clinical decision-support systems by effectively compromising clinical language models.

Extending our security exploration to multimodal settings, we investigate backdoor attacks on Vision-Language Models (VLMs), particularly in complex image-to-text generation tasks, proposing innovative techniques (TrojVLM, VLOOD) capable of embedding backdoors without direct access to original training data, thus showcasing practical risks in real-world scenarios.

In the second dimension, we address efficiency and interpretability challenges in clinical and pathology applications. We introduce TCP-LLaVA, the first multimodal large language model (MLLM) designed explicitly for Whole Slide Image (WSI) Visual Question Answering (VQA). Utilizing a novel token compression mechanism inspired by transformer-based models, TCP-LLaVA substantially reduces computational resource consumption while maintaining superior VQA performance across multiple tumor subtypes. Additionally, we present a multimodal transformer model integrating structured Electronic Health Records (EHR) with clinical notes, demonstrating enhanced predictive accuracy and interpretability for in-hospital mortality prediction through integrated gradient-based interpretability methods.

Together, these contributions present a comprehensive approach to ensuring AI models are not only secure against malicious manipulation but also efficient and interpretable for critical clinical applications, underscoring the essential need for trustworthy and effective AI systems.

Speaker: Weimin Lyu

Zoom: https://stonybrook.zoom.us/j/2392326575?pwd=SVQ2VkFXTnZZYmJUMXgvTXBuZWM3UT09

Meeting ID: 239 232 6575
Passcode: 436192
Educational objectives:
  1. Describe the data modalities available in All of Us (EHR, genomics, wearables) and explainhow OMOP CDM standardization enables reproducible cohort definitions across CDRversions.
  2. Evaluate the role of AI-assisted coding tools in accelerating the research-to-manuscriptpipeline while maintaining investigator oversight and scientific rigor.
  3. Apply a secure two-environment workflow to distinguish between exportable code artifactsand environment-bound data outputs when working within controlled-access researchplatforms.


Speaker: Hants Williams, Ph.D., R.N., Applied Health Informatics, Stony Brook University

Location: MART Building, Room: 7M-0602 (7th Floor)

Zoom: https://stonybrook.zoom.us/j/95617197636?pwd=KytzZ2pVRG9SZGpKZUtpNXJISjNjZz09
Meeting ID: 95617197636
Passcode: 924293
Presented by Stony Brook University Department of Biomedical Informatics and Long Island Network for Clinical and Translational Science (LINCATS).

The seminar aims to empower participants with the knowledge and skills necessary to harness AI effectively in clinical practice and research. It will equip attendees with practical insights, case studies, and interactive discussions led by experts in both AI and medicine, fostering a collaborative environment where attendee can explore how to overcome barriers and maximize the potential of AI in transforming modern healthcare delivery.

All Stony Brook Audiences Welcome.
Please note: This exciting event is open to all Stony Brook Faculty/Staff/Students. While the overarching theme for this event is the application of AI in medicine, the event is designed to bridge the professional practice gap that exists between cutting-edge AI research and its practical implementation in clinical settings, While AI holds immense promise for transforming healthcare delivery, many physicians and researchers lack the foundational knowledge and practical skills needed to effectively integrate AI into their daily practices.

THIS CONFERENCE IS FOR STONY BROOK UNIVERSITY & HOSPITAL FACULTY/STAFF & STUDENTS ONLY.


Registration link: https://cme.stonybrookmedicine.edu/continuing-medical-education/conferences/235/bench-to-bedside-understanding-the-practical-application-of-ai-in-medicine-2024/10/17/2024

FOR QUESTIONS
joseph.cesaria@stonybrookmedicine.edu
mary.saltz@stonybookmedicine.edu
Zoom Link: https://github.com/giorgianb/spdhackspring2021/blob/main/bit.ly/spdhack2021

ΣΦΔ Hack Spring 2021 is ΣΦΔ's first annual machine learning hackathon. ΣΦΔ Hack Spring 2021 aims to introduce Stony Brook students to the rich and challenging field of machine learning, and develop the skills necessary to build sophisticated machine learning models on their own.
 
More info here: https://github.com/giorgianb/spdhackspring2021/blob/main/README.md
The overall purpose of this seminar is to bring together people with interests in Computer Vision theory and techniques and to examine current research issues. This course will be appropriate for people who already took a Computer Vision graduate course or already had research experience in Computer Vision. To enroll in this course, you must either: (1) be in the PhD program or (2) receive permission from the instructors. Each seminar will consist of multiple short talks (around 15 minutes) by multiple students. Students can register for 1 credit for CSE656. Registered students must attend and present a minimum of 2 talks. Everyone else is welcome to attend. Fill in https://forms.gle/q6UG9ygauLp2a8Po8 to subscribe to our mailing list for further announcement.
Topic: AI Seminar: Owen Rambow
Time: Mar 17, 2021 10:00 AM Eastern Time (US and Canada)
Join Zoom Meeting

https://stonybrook.zoom.us/j/93614644178?pwd=MzJtVDJYYmU5T1dtMzJiUFMxb0x4dz09
Meeting ID: 936 1464 4178.    Passcode: 965936






Natural Language Understanding and Semantic Parsing

(Partly joint work with former colleagues at Elemental Cognition)

Semantic parsing refers to the task of determining the propositional content of language: who did what to whom.  It is part of the larger task of natural language understanding (NLU).  I will start out by discussing what full NLU means, and argue that we are still far away, as a field, from solving full NLU, or even from knowing how to evaluate it.

In the second part of the talk, I will situate semantic parsing in the context of several other NLU subtasks.  Typically, the target representation of semantic parsing uses an ontology (such as PropBank or FrameNet).  Semantic parsing includes the subtasks of word sense disambiguation, argument detection, and argument role labeling.  I will discuss choices among possible target ontologies.  I will justify why we created a new ontology, Hector, based on FrameNet and the lexical resource NOAD, and explain some of its characteristics.

In the third part of the talk, I will present experiments we performed using transformer models.  We obtain best results using a two-phase model, in which we first choose the frame, and then, given the frame, choose the arguments.  We encode the problem for both tasks using indices in the sentence.  While we develop the parser for our new ontology Hector, this approach also beats the state of the art for FrameNet and PropBank parsing.Biography:  I am a professor in the Department of Linguistics at Stony Brook University with a joint appointment in IACS.

Until recently, I was a research scientist at Elemental Cognition. Elemental Cognition is working on deep natural language understanding.

I got my PhD with Aravind Joshi at the University of Pennsylvania in 1994. I have worked at CoGenTex, and at AT&T Labs -- Research, and for many years I was a research scientist at Columbia University in the Center for Computational Learning Systems.

University Libraries Presents: Do you want more control over when to use AI features in your Google apps and when browsing online? Are you tired of Gmail trying to finish your sentences for you? Drop in to this brief tutorial, which will walk through the settings you can turn on and off in various Google products to keep your agency where you want it.

Register here for the Zoom session.

Abstract: Gaussian Probability Path-based Generative Models (GPPGMs) generate data by reversing a stochastic process that progressively corrupts samples with Gaussian noise. Despite state-of-the-art results in 3D molecular generation, their deployment is hindered by the high cost of long generative trajectories, often requiring hundreds to thousands of steps during training and sampling. In this work, we propose a principled method, named GAGA, to improve generation efficiency without sacrificing training granularity or inference fidelity of GPPGMs. Our key insight is that different data modalities obtain sufficient Gaussianity at markedly different steps during the forward process. Based on this observation, we analytically identify a characteristic step at which molecular data attains sufficient Gaussianity, after which the trajectory can be replaced by a closed-form Gaussian approximation. Unlike existing accelerators that coarsen or reformulate trajectories, our approach preserves full-resolution learning dynamics while avoiding redundant transport through truncated distributional states. Experiments on 3D molecular generation benchmarks demonstrate that our GAGA achieves substantial improvement on both generation quality and computational efficiency.

Speaker: Jingxiang Qu

Location: New Computer Science 220
Join a faculty development program to support instructors across campus with navigating/integrating AI in their courses. We're inviting interested faculty to participate in the grant project called Fostering Writing-to-Learn Skills with Critical AI Literacy: A Faculty Development and Student Support Program (funded through the AI3 Institute).

Time commitment and completion requirements :

  • Attend four sessions and a final symposium on the following dates/times:

    • Friday, September 12 from 11am - 12:30pm over Zoom

    • Friday, September 26 from 11am - 12:30pm over Zoom

    • Friday, October 10 from 11am - 12:30pm over Zoom

    • Friday, October 24 from 11am - 12:30pm over Zoom

    • Friday, November 14 from 10am - 1pm in Wang 201 - please note that this is an in person session only

  • Engage with online materials in Brightspace prior to each of the sessions (mainly to update a syllabus, assignment, or teaching strategy that you can share and discuss at the workshop)

Contact: Shyam Sharma, Christine Fena, and Rose Tirotta-Esposito with questions.

https://docs.google.com/document/d/1b51tvfK0HSOkCW7cwYq2nyyeeHtvBZYC7_XHv7Av8wQ/edit?tab=t.0