Date of Event

Joel H. Saltz, MD, PhD
SUNY Distinguished Professor Cherith Professor and Founding Chair
Department of Biomedical Informatics
Stony Brook University

Apostolos K. Tassiopoulos, MD, FACS
Professor of surgery and vice chair for quality and outcomes Chief of the Division of Vascular and Endovascular Surgery
Director of the Stony Brook Vascular Center Stony Brook Medicine

Title: Clinical applications of artificial intelligence to improve diagnosis and risk stratification for patients with aortic aneurysms

Time: Wednesday, Feb 17, 2021 3 pm - 4 pm

Join Zoom Meeting
https://stonybrook.zoom.us/j/95617197636?pwd=KytzZ2pVRG9SZGpKZUtpNXJISj...
Meeting ID: 956 1719 7636 Passcode: 924293

Jerome Liang, PhD 

Professor of Radiology, Biomedical Engineering, Electric and Computer Engineering, and Computer Science 

Co-Director of Research 

Department of Radiology 


Artificial intelligence, machine learning and computer-aided diagnosis in cancer Imaging 

February 11, 2021 

12:00pm - 1:00pm 

Virtual Seminar - Zoom 

https://stonybrook.zoom.us/j/98155629970?pwd=YzRvcnJnTlNTT1E5ak1oZEJvWTZHQT09 

Meeting ID: 981 5562 9970 

Passcode: 950410 

Host: 

Wei Zhao, PhD 

Professor of Radiology and Biomedical Engineering 

Educational Objectives  

Upon completion, participants should be able to:  

(1) Learn different medical image representations of cancer attributes, such as heterogeneity, high tendency to grow, etc.  

(2) Learn how computer (machine) can be trained (or programmed) to recognize the image representations.  

(3) Learn how artificial intelligence can drive the machine learning to maximize the performance of computer-aided diagnosis (CADx).  

Disclosure Statement  

In compliance with the ACCME Standards for Commercial Support, everyone who is in a position to control the content of an educational activity provided by the School of Medicine is expected to disclose to the audience any relevant financial relationships with any commercial interest that relates to the content of his/her presentation.  

 

The speaker, Jerome Liang, PhD, the planners; and the CME provider have no relevant financial relationship with a commercial interest (defined as any entity producing, marketing, re-selling, or distributing health care goods or services consumed by, or used on, patients), that relates to the content that will be discussed in the educational activity.  

 

CONTINUING MEDICAL EDUCATION CREDITS  

The School of Medicine, State University of New York at Stony Brook, is accredited by the Accreditation Council for Continuing Medical Education to provide continuing medical education for physicians.  

 

The School of Medicine, State University of New York at Stony Brook designates this live activity for a maximum of 1.0 AMA PRA Category 1 Credits™. Physicians should only claim credit commensurate with the extent of their participation in the activity.  

 

Should you be logging in Zoom by using your tablet or mobile device, please be sure to add your Full Name and/or Email for CME credit. 

You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.

Abstract: Designing custom proteins could revolutionize medicine and materials, but it remains an immense scientific challenge. Our work uses large-scale AI foundation models to generate novel proteins tailored to bind specific small molecules. Each AI-generated design is passed through a rigorous, multi-stage validation pipeline to ensure it is biophysically realistic. A key innovation is fine-tuning our model with data from molecular dynamics (MD) simulations, exposing it to the conformational dynamics and energetics of protein-ligand binding. This physics-aware training results in novel protein designs with enhanced stability and more effective binding capabilities.

Bio: Xin Dai is an Assistant Computational Scientist in the Artificial Intelligence Department of the CDS. His work centers on AI for Science with a strong focus on computational biology. He earned his PhD in Physics from Tsinghua University.

Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.

Location: CDS, Bldg. 725, Training Room

Join Zoom Meeting: https://bnl.zoomgov.com/j/1604383624?pwd=ffQ5cUPNxTI7nzClKQO6cnsNbhF9Vf.1

Meeting ID: 160 438 3624
Passcode: 558449

Synthetic Dreams and Ghost Machines

Dr. Steven Skiena will join the Cinema for a presentation exploring the rapidly evolving worlds of artificial intelligence and robotics.

Dr. Skiena is Distinguished Teaching Professor of Computer Science and Associate Director of the AI Innovation Institute at Stony Brook University. A leading researcher in data science and algorithms, he is the author of several influential books on AI and computation, including The Algorithm Design Manual and The Data Science Design Manual.

The presentation will be followed by a screening of Ex Machina, Alex Garland's provocative science-fiction thriller exploring the seductive and unsettling boundaries between human consciousness and artificial intelligence.


Time: Jan 26, 2021 03:00 PM Eastern Time (US and Canada)

All are welcome!

Zoom Meeting:
https://stonybrook.zoom.us/j/93818552212?pwd=ajZkT2x4a2tiaDJUL1h3VFhLZEgwQT09

Meeting ID: 938 1855 2212
Passcode: 802722

Title: Data-Driven Document Unwarping

Abstract: Capturing document images is a common way to digitize and record physical documents due to the ubiquitousness of mobile cameras. To make text recognition easier, it is often desirable to digitally flatten a document image when the physical document sheet is folded or curved. However, unwarping a document from a single image in natural scenes is very challenging due to the complexity of document sheet deformation, document texture, and environmental conditions. Previous model-driven approaches struggle with inefficiency and limited generalizability. In this thesis, I investigate several data-driven approaches to tackle the document unwarping problem.

Data acquisition is the central challenge in data-driven methods. I first design an efficient data synthesis pipeline based on 2D image warping and train DocUNet, the pioneering data-driven document unwarping model, on the synthetic data. A benchmark dataset is also created to facilitate comprehensive evaluation and comparison. To improve the unwarping performance by training on more realistic data, I introduce the Doc3D dataset and DewarpNet. Supervised by 3D shape ground truth in Doc3D, DewarpNet is significantly better than DocUNet. DocUNet and DewarpNet depend on the synthetic data for the ground truth deformation annotation. To exploit the real-world images, I propose PaperEdge, a weakly supervised model trained with in-the-wild document images with easy-to-obtain boundary information. PaperEdge surpasses DewarpNet by utilizing both the synthetic data and weakly annotated real data in the Document In the Wild (DIW) dataset. Finally, I propose to incorporate the 3D physical constraints in training DewarpNet and PaperEdge. The constraints regulate the possible deformations on document papers. I also propose to augment the Doc3D and DIW dataset by introducing an online document segmentation model and better hardware.

As part of a grant project funded by the AI3 Institute, a group of instructors participated in a faculty development program, Fostering Writing-to-Learn Skills with Critical AI Literacy: A Faculty Development and Student Support Program. This program was developed to support instructors across campus with navigating/integrating AI in their courses specifically around writing intensive/involved assignments. We would like to invite anyone interested to the culmination of this program, a mini-symposium, where the participants will share practical changes they made or are making around writing intensive/involved assignments and AI.

Location: Wang 201

A light lunch will be served. Please register by Friday, November 7th.

Speaker Petar Djuric Refreshments will be provided Deep Gaussian processes: Theory and applications Petar M. Djurić Department of Electrical and Computer Engineering Stony Brook University Abstract: Gaussian processes are an infinite-dimensional generalization of multivariate normal distributions. They provide a principled approach to learning with kernel machines and they have found wide applications in many fields. More recently, with the advance of deep learning, the concept of deep Gaussian processes has emerged. Deep Gaussian processes can be viewed as multilayer hierarchical organizations of Gaussian processes that are equivalent to infinitely wide multiple layer neural networks. Deep Gaussian processes have improved capacity for prediction and classification over standard Gaussian processes, while models based on them continue to allow for full Bayesian treatment and for applications when the amount of available data is limited. The theory of recent progress in deep Gaussian processes will be presented and some applications will be provided. Biosketch: Petar M. Djurić received the B.S. and M.S. degrees in electrical engineering from the University of Belgrade, Belgrade, Yugoslavia, respectively, and the Ph.D. degree in electrical engineering from the University of Rhode Island, Kingston, RI, USA. He is a SUNY Distinguished Professor and currently, he is a Chair of the Department of Electrical and Computer Engineering, Stony Brook University, Stony Brook, NY, USA. Djurić was a recipient of the IEEE Signal Processing Magazine Best Paper Award in 2007 and the EURASIP Technical Achievement Award in 2012. From 2008 to 2009, he was a Distinguished Lecturer of the IEEE Signal Processing Society. He was the Editor-in-Chief of the IEEE Transactions on Signal and Information Processing over Networks (2015-2018). Djurić is a Fellow of IEEE and EURASIP

To truly understand human language, we must look at words in the context of the human generating the language. Factors such as demographics, personality, modes of communication, and emotional states have shown to play a crucial role in NLP models pre-LLMs era. Steps of mathematically defining the inclusion of human context in language modeling and more will be discussed with Nikita Soni, a PhD student at Stony Brook University co-advised by H. Andrew Schwartz and Niranjan Balasubramanian. She is the lead organizer of the workshop on human-centered large language modeling.

Please register for the STEM Speaker Series Zoom event here

Please RSVP for the STEM Speaker Series in-person event here
IACS and the Dept of Ecology and Evolution invite you to a PRODiG+ Fellowship Seminar.

Computational Approaches to Understanding and Forecasting Biodiversity Responses to Global Change

Summary: Advancing biodiversity forecasting requires developing computational approaches that better represent ecological complexity. In this talk, I will discuss how my research integrates field observations, predictive modeling, machine learning, and spatiotemporally explicit environmental data to develop more mechanistic and reliable forecasting tools.

Speaker: Dr. Anna Thonis, a postdoctoral researcher in NYU's Winchell Lab and Founder and Co-Chair of the IUCN SSC Anoline Lizard Specialist Group, studies how anthropogenic change reshapes the distributions of reptiles. Combining field and quantitative modeling methods, her work focuses on the ecology and conservation of Puerto Rican and urban Anolis lizards. Her website can be accessed here.

Location: IACS Seminar Room, and via Zoom.

Zoom: https://stonybrook.zoom.us/j/97023584426?pwd=HrnrYeYJfVUhaS8iOKjWF3Tbh8HYS1.1&jst=2
ID: 97023584426
Passcode: 241762