https://stonybrook.zoom.us/j/94414957054?pwd=V1JMc2EwSnVGMFdaUlNobE9DSHU4dz09#success
ID: 94414957054
Password: 094758

Speaker: Heather J. Lynch


Bio:  Dr. Heather J. Lynch is an Associate Professor of Ecology & Evolution at Stony Brook University. Prior to Stony Brook, Dr. Lynch was an Adjunct Professor of Applied Math and Statistics at UC Santa Cruz and a Research Scientist in the Biology Department at the University Maryland. Dr. Lynch received her A.B. in Physics from Princeton University in 2000, an A.M. in Physics from Harvard University in 2004, and a Ph.D. in Organismal and Evolutionary Biology from Harvard University in 2006. Dr. Lynch's research is focused on spatial population dynamics of Antarctic penguins, with a particular focus on statistical and mathematical models to integrate patchy time series with remote sensing imagery. These data will allow Dr. Lynch and colleagues to develop mathematical models to explore how coloniality constrains the colonization and extinction of individual habitat patches and, ultimately, the metapopulation dynamics of colonial seabirds.   
Come learn of the exciting research being done across so many fields using AI! The recipients of AI3's seed awards will present their work in our showcase on November 17, 2025 and we would love to see you there!

The schedule is listed below.

Location: New Computer Science Room 120

Session 1 - 10:30 AM to 11:45

Kevin Reed, PI, Introducing the AI Techniques in Assessing the Future Changes of Extreme Precipitation and Associated Flood Risks
Co-PIs: Tangnyu Song, Ishrat Dollan
Consultant: Jayesh Rathi

Ruwen Qin, PI, AI-Assisted Analysis of Materials in Recycling Streams
Consultant: Vismay Vora

Giuseppe Gazzola, PI, Using AI to Investigate National Literatures: Italy, France, Spain 1733- 1794
Consultant: Jayesh Rathi

Joseph Lemelin, PI, IAE2^3: AI Ecologies
Co-PIs: Katherine Johnston, Aruna Balasubramanian, Matthew Salzano

Niranjan Balasubramanian, Co-PI, Molecular Foundations for Sustainability: Data Analytics for Sustainable Cellulose Scaffolding Modifications to Remediate Diverse Water Contamination Challenges
PI: Benjamin Hsiao, Co-PI: I. V. Ramakrishnan

Owen Rambow, PI,Achieving Common Ground Through Language and Vision in Mixed-Initiative Human-Machine Communication Via zoom
Co-PI Susan Brennan

Session 2 - 12:30 PM to 1:45

Jack McSweeney, PI, Developing Machine Learning Approaches to Classify Internal Waves
Consultant: Vismay Vora

Eric Josephs, PI, Learning Design Rules to Personalize Precision CRISPR Gene Therapies with Interpretable AI
Consultant: Deboparna Banerjee

Shyam Sharma, PI, Fostering Writing-to-Learn Skills through Critical AI Literacy: A Faculty Development and Student Support Program
Co-PIs: Rose Tirotta-Esposito, Christine Fena

Ritwik Banerjee, PI, A Pragmatic Approach to AI for Digital Media Integrity: Combating Complex Misinformation Through Fallacies and Propaganda
Co-PI: Ruobing Li

Ziyu Shu, Co-PI, Novel Clinical Applications of Deep Image Prior-based CT Image Reconstruction
PI: Xin Qian, Co-PIs: Tiezhi Zhang, Zhaozheng Yin

Prateek Prasanna, Co-PI, An Artificial Intelligence-Driven Clinical Decision Support Tool for the Management of Abdominal Aortic Aneurysm
PI: Apostolos Tassiopoulos, Co-PI's: Mary Saltz, Janos Hajagos, Tahsin Kurc



Presenters will give a 5-minute talk with 2 minutes for Q & A.




Time: 04/28 Wed 3pm-4pm

Remote Access
Join Zoom Meeting https://stonybrook.zoom.us/j/95617197636?pwd=KytzZ2pVRG9SZGpKZUtpNXJISjNjZz09 
Meeting ID: 956 1719 7636 Passcode: 924293

Title: Brain imaging genetics for Alzheimer's disease: integrated analysis and machine learning

Li Shen, Ph.D.
Professor of Informatics
Department of Biostatistics, Epidemiology and Informatics 
Perelman School of Medicine
University of Pennsylvania

Bio: Li Shen, Ph.D., is a Professor of Informatics in the Department of Biostatistics, Epidemiology and Informatics at the Perelman School of Medicine in the University of Pennsylvania. He is an elected fellow of the American Institute for Medical and Biological Engineering (AIMBE). He obtained his Ph.D. degree in Computer Science from Dartmouth College. The central theme of his lab is focused on developing computational and informatics methods for integrative analysis of multimodal imaging data, high throughput omics data, cognitive and other biomarker data, electronic health record (EHR) data, and rich biological knowledge such as pathways and networks, with applications to complex disorders. His research interests include medical image computing, biomedical informatics, machine learning, network science, imaging genomics, Alzheimer's disease, and big data science in biomedicine. He has authored over 280 peer-reviewed articles (h-index 57) in these fields. Dr. Shen's work has been continuously supported by the NIH and NSF, and he is presently the PI of multiple NIH and NSF grants on developing computational methods for various biomedical applications including brain imaging genomics, genetics of Alzheimer's disease, genetics of human connectome, mining drug effects from the EHR data, and big data mining in brain science. He is co-leading the NIA Alzheimer's Disease Sequencing Project AI4AD Consortium and oversees the imaging genomics aspect of this landmark project. Dr. Shen served as the Executive Director of the Medical Image Computing and Computer Assisted Intervention (MICCAI) Society Board of Directors during 2016-2019. He has chaired and co-chaired various professional meetings in medical image computing and bioinformatics. He is an Associate Editor of BioData Mining and Frontiers in Radiology (Section of AI in Radiology), and serves on the Editorial Board of Medical Image Analysis and Brain Imaging and Behavior.

Abstract: Brain imaging genetics is an emerging data science field, where integrated analysis of brain imaging and genetics data, often combined with other biomarker, clinical and environmental data, is performed to gain new insights into the genetic, molecular and phenotypic characteristics of the brain as well as their impact on normal and disordered brain function and behavior. Many methodological advances in brain imaging genetics are attributed to large-scale landmark biobank projects such as the Alzheimer's Disease Sequencing Project, the Alzheimer's Disease Neuroimaging Initiative, and the UK Biobank. Using the study of Alzheimer's disease as an example, we will discuss fundamental concepts, state-of-the-art statistical and machine learning methods, and innovative applications in this rapidly evolving field. We show that the wide availability of brain imaging genetics data from various large-scale biobanks, coupled with advances in biomedical statistics, informatics and computing, provides enormous opportunities to contribute significantly to biomedical discoveries in brain science and to impact the development of new diagnostic, therapeutic and preventative approaches for complex brain disorders such as Alzheimer's disease.

More details:
https://bmi.stonybrookmedicine.edu/sites/default/files/shen_li_04_28_flyer.pdf
Abstract: Recent work in NLP uses debates between multiple LLMs to arrive at a more accurate conclusion. Earlier chain-of-thought prompting also shows improvements in accuracy when the model is asked to provide step-by-step reasoning in its response. Many publications since have developed strategies to improve the reasoning of model output with the goal of generating a more accurate result. However, even when asked to provide problem solving steps, the content of the reasoning provided by models is not well studied for all tasks and sometimes contains errors or conflicting statements even when the final result is correct. In fact, when evaluated across reasoning tasks, evidence shows that LLMs are not learning how to reason but are instead mimicking relevant solutions from their training sets.
By studying and evaluating the argumentation that LLMs provide, we can determine factors that may benefit or hinder the model's ability to give a complete, cohesive, and thorough answer. While there are signs that LLMs pattern match, finding where, when, and why this fails is valuable, as there may be ways to help the model imitate solutions that are more relevant to the task it is attempting to solve. Determining when pattern matching is not enough could show an area of improvement for future generations of LLMs. This research may separately aid in work on human-(AI)agent and inter-agent interaction. Specifically, frameworks could be used to determine when and why other models or humans are convinced by LLM-generated responses and which argument methods cause other models to change their response. Our current research in systematic versus heuristic cues shows that large language models sometimes present systematic or heuristic reasoning patterns based on prompting. Future research aims to explore other methods of classifying argumentation.

Speaker: Kiera Gross

Joining link: https://meet.google.com/xae-ywpv-udo
Are you concerned about AI issues with your asynchronous online courses? Is your fully online course vulnerable to AI plagiarism? Do you want to engage your online students using AI? Discover the future of education with our AI-powered solutions designed specifically for online asynchronous courses. This innovative approach uses artificial intelligence to transform the way courses are delivered, making learning more personalized, engaging, and effective.

https://stonybrook.zoom.us/meeting/register/tJMvd-irqTotGtQONZqerPf_TnhXcx8t2sA1

Are you tired of drowning in a sea of resumes and losing top talent in the hiring whirlwind? Transform your hiring process through a different lens and learn about AI in the Workplace and the Applicant Tracking System (ATS). Whether you're a recent graduate seeking your first job or an undergraduate student looking to delve into more career-oriented opportunities, this workshop by SBU Career Center is designed to equip you with the knowledge and strategies needed to succeed.

Register here: https://stonybrook.joinhandshake.com/stu/events/1568133?

Abstract: The remarkable success of large foundational models, such as LLMs and diffusion models, is built on their learning over vast amounts of static data from the Internet. However, human learning and problem-solving are fundamentally interactive processes--humans learn by engaging with their environment, tools, search engine, and feedback loops, iteratively refining their understanding and decisions. This gap between the interactivity of human learning and the static nature of model training raises a critical question: how can we imbue foundational models with the capacity for meaningful interaction?

In this talk, I will explore methods to enhance foundational models by incorporating interaction with the external environment. I will discuss strategies such as leveraging external tools, compilers, function calls to provide dynamic feedback to enhance foundation models. By drawing inspiration from human's interactive learning processes, I demonstrate how interaction-driven learning can lead to models that are not only more accurate but also more adaptable to real-world applications.

This work bridges the gap between static training paradigms and the dynamic, iterative nature of human intelligence, paving the way for a new generation of interactive AI systems.

Bio: Wenhu Chen has been an assistant professor at the Computer Science Department in University of Waterloo and Vector Institute since 2022. He obtained the Canada CIFAR AI Chair Award in 2022 and CIFAR Catalyst Award in 2024. He has worked for Google Deepmind as a part-time research scientist since 2021. Before that, he obtained his PhD from the University of California, Santa Barbara under the supervision of William Wang and Xifeng Yan. His research interest lies in natural language processing, deep learning and multimodal learning. He aims to design models to handle complex reasoning scenarios like math problem-solving, structure knowledge grounding, etc. He is also interested in building more powerful multimodal models to bridge different modalities. He received the Area Chair Award in AACL 2023, the Best Paper Honorable Mention in WACV 2021, the Best Paper Finalist in CVPR 2024, and the UCSB CS Outstanding Dissertation Award in 2021.
Join us for the New York State Innovation Summit on October 28-29, 2024 in Syracuse, NY. This multi-day is event for NYS organizations that want to showcase and discover new and emerging technologies that support innovation and drive business growth. The event serves as an opportunity to foster collaboration; introduce industry to experts that can assist growth, strengthen our statewide innovation ecosystem and showcase promising early stage companies. Whether you're a startup, an economic developer, or an established manufacturer, the NYS Innovation Summit is for you. The 2024 New York State Innovation Summit will showcase companies and researchers at the forefront of emerging technologies and new advancements in production capabilities. This event celebrates New York State leadership in technology-led economic growth with experts in biotechnology, new materials, energy innovation, and artificial intelligence that will explore current technology convergence opportunities, ways to accelerate commercialization, and issues of manufacturing sustainability.

Abstract: Generative visual models like Stable Diffusion and Sora generate photorealistic images and videos that are nearly indistinguishable from real ones to a naive observer. However, their grasp of the physical world remains an open question: Do they understand 3D geometry, light, and object interactions, or are they mere pixel parrots of their training data? Through systematic probing, I will demonstrate that these models surprisingly learn fundamental scene properties--intrinsic images such as surface normals, depth, albedo, and shading (à la Barrow & Tenenbaum, 1978)--without explicit supervision, which enables applications like image relighting. But I will also show that this knowledge is insufficient. Careful analysis reveals unexpected failures: inconsistent shadows, multiple vanishing points, and scenes that defy basic physics. All these findings suggest these models excel at local texture synthesis but struggle with global reasoning: a crucial gap between imitation and true understanding. I will then conclude by outlining a path toward generative world models that emulate global and counterfactual reasoning, causality, and physics.

Bio: Anand Bhattad is a Research Assistant Professor at the Toyota Technological Institute at Chicago. He earned his PhD from the University of Illinois Urbana-Champaign in 2024 under the mentorship of David Forsyth. His research interests lie at the intersection of computer vision and computer graphics, with a current focus on understanding the knowledge encoded in generative models. Anand has received Outstanding Reviewer honors at ICCV 2023 and CVPR 2021, and his CVPR 2022 paper was nominated for a Best Paper Award. He actively contributes to the research community by leading workshops at CVPR and ECCV, including Scholars and Big Models: How Can Academics Adapt? (CVPR 2023), CV 20/20: A Retrospective Vision (CVPR 2024), Knowledge in Generative Models (ECCV 2024), and How to Stand Out in the Crowd? (CVPR 2025). For more details, visit https://anandbhattad.github.io/


You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.

Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.

AI and Edge Processing Co-Design for Radiation Detectors

Abstract: Artificial Intelligence (AI) offers exciting new opportunities for enhancing the performance of radiation detectors, ultimately leading to improved physics outcomes. Furthermore, with the explosive growth in data rates being seen by next-generation radiation detectors, deployment of AI algorithms at the edge by embedding intelligence within or near the detector front-end can be transformative. Such integration enables real-time data filtering, noise suppression, feature extraction, and adaptive control, while reducing downstream bandwidth and power consumption. This talk will cover three efforts that bring AI to the forefront of detector technology. First, we demonstrate how AI-based algorithms can be used for position reconstruction in virtual Frisch-grid (VFG) detectors by compensating for charge transport distortions and detector non- uniformities, leading to significantly enhanced fidelity in imaging of gamma-ray interactions. Second, we present a smart readout application specific integrated circuit (ASIC) that combines digital signal processing with co-designed artificial neural networks to enable on-chip regression and classification of detector signals, while meeting stringent constraints on accuracy, speed, and area. Finally, we introduce our recent efforts related to the development of electro-photonic processing architectures that integrate CMOS electronics and silicon photonics for near-sensor AI acceleration. These architectures aim to leverage cross-disciplinary co-design from algorithms to hardware, to achieve low latency and energy-efficient processing of detector data.

Biography: Dr. Prashansa Mukim is an early-career researcher in the Instrumentation Department at BNL, where she works on the design of front-end electronics for extreme environments and the development of co-design methodologies for novel processing modalities and beyond-CMOS technologies. Prior to joining BNL, she was a post-doctoral researcher at the National Institute of Standards and Technology (NIST) in Maryland, where she focused on characterizing the properties of CMOS circuits at cryogenic temperatures and applications of spintronic devices for neuromorphic computing. She received her Ph.D. in Electrical and Computer Engineering from the University of California, Santa Barbara, in 2021.

Location: CDS, Bldg. 725, Training Room

Join ZoomGov Meeting: https://bnl.zoomgov.com/j/1608585935?pwd=UemgEkqijfNf3vIJIGuOa2MdjsunaT.1

Meeting ID: 160 858 5935
Passcode: 076033