Abstract: Autonomous systems, whether on Earth or in space, rely on 3D perception to understand and interact with the world around them. Yet traditional techniques for 3D understanding often depend on human designed features, fixed sensors, and conventional imaging modalities. This constrained approach can limit every stage of perception, from sensing to interpretation to decision making.
In this talk, we'll explore an alternative paradigm for imaging: physically based neural representations for 3D scenes and 3D sensing systems. We will discuss how recent advances in large scale learned representations can be used to jointly optimize both 3D scene models and the design of sensing systems for 3D capture, with the goal of enabling task specific perception systems.
Unlike modern AI models trained on internet scale datasets, these specialized 3D representations typically operate in data sparse regimes and therefore require a different kind of prior. We'll examine how grounding these learned representations in the physics of light transport can improve our understanding of scene structure, and inform imaging system design even with limited data. By connecting physical insights with learned representations, we'll highlight new possibilities for robust, efficient, and adaptive perception in challenging environments.

Speaker: Nikhil Behari is a graduate student in the Camera Culture group at the MIT Media Lab, advised by Professor Ramesh Raskar. His research interests include computational imaging, 3D scene understanding, and multi-agent decision-making under uncertainty, with a focus on automating imaging system design for 3D perception in human and planetary health. His research is supported by the NASA Space Technology Graduate Research Fellowship. He received his bachelor's in Computer Science and Statistics from Harvard University in 2022.

Abstract: Materials used in extreme environments, such as high temperatures, irradiation, and stress, often fail due to rapid defect generation and microstructural evolution, and traditional approaches cannot explore the vast design space needed for next-generation alloys. I will present a machine learning framework powered by massive computing that links individual atomic motion to microstructural evolution. Neural network kinetics models trained on first-principles data map vacancy barrier spectra and capture correlated diffusion in multicomponent alloys, revealing design strategies to suppress radiation damage. At larger scales, simulations uncover dislocation patterning and distinguish between confined and extended slip bands, offering new insight into collective dislocation motion and deformation instabilities. By integrating AI-driven modeling, large-scale computing, and experimental validation, my research goal is to accelerate the discovery of damage-tolerant materials and advance fundamental understanding of defect physics in extreme environments.

Speaker Bio: Penghui Cao is an Associate Professor in Mechanical and Aerospace Engineering at the University of California, Irvine, with a joint appointment in Materials Science and Engineering. He received his PhD in mechanical engineering from Boston University and subsequently worked as a Postdoctoral Associate in the Department of Nuclear Science and Engineering at the Massachusetts Institute of Technology from 2014 to 2018. Dr. Cao's research focuses on understanding the fundamental mechanisms that govern radiation responses and microstructure evolution in materials, and on developing advanced alloys for high-performance nuclear energy systems. His lab advances computational and modeling algorithms, integrates advanced manufacturing techniques to tailor microstructures, and leverages state-of-the-art electron microscopy to characterize and assess underlying mechanisms. He is the recipient of the DOE Early Career Research Program Award and the UCI Samueli School's Mid-Career Award for Faculty Excellence in Research.

Location: Institute for Advanced Computational Science, Seminar Room

*This seminar will be held in-person and online. Zoom link below*

Join Zoom Meeting: https://stonybrook.zoom.us/j/96410717491?pwd=3WGMwbLYNMSbI2IF160VXkvv2JmCQ1.1

Meeting ID: 964 1071 7491
Passcode: 399333



Abstract:
Large language models (LLMs) have transformed the way humans write code, bringing unprecedented automation to software development. In this talk, I will first provide an overview of my research on enhancing LLMs' code intelligence, optimizing each step of the development pipeline towards more complex software engineering tasks. I will then delve into my key contributions, focusing on how to equip LLMs with a deeper, more comprehensive understanding of software programs. Finally, I will discuss the future of AI-driven software engineering, envisioning a new era of automation that is more reliable, intelligent, and cost-efficient.

Bio:
Yangruibo (Robin) Ding is a Ph.D. candidate in the Department of Computer Science at Columbia University. His research is at the intersection of Software Engineering and Machine Learning, focusing on developing large language models (LLMs) for code. He trains LLMs to generate, analyze, and refine software programs and constructs benchmarks to systematically evaluate LLMs in solving software engineering tasks. He also studies how to improve LLMs' reasoning capability to tackle complex programming tasks, such as debugging and patching. His interdisciplinary research has been published in top-tier conferences of software engineering, programming languages, natural language processing, and machine learning. He won an ACM SIGSOFT Distinguished Paper Award, an IEEE TSE Best Paper Runner-up, and received an IBM Ph.D. Fellowship.
Location:
NCS 120

Description:

Curious about what AI image generation tools are out there and how they work? Come down to the library Galleria space (outside the Central Reading Room) to see some demonstrations and learn more about them.

Librarians Chris Kretz and Ahmad Pratama, along with David Ecker of DoIT, will be hosting Explore AI demos from Monday - Wednesday this week on different topics. Whether you're new to AI or an experienced user, stop by and take a look!

Location: Library Galleria

You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.

Abstract: Two-dimensional (2D) materials such as graphene, hBN, and TMDs offer atomically sharp interfaces and unprecedented tunability when vertically assembled into van der Waals heterostructures. These stacks have enabled discoveries ranging from moiré superconductivity and correlated insulators to quantum emitters and next-generation nanoelectronic devices. Yet constructing high-quality heterostructures remains largely artisanal: researchers manually identify exfoliated flakes, align a polymer stamp by eye, and finely adjust temperature and contact geometry through tacit skill. This manual workflow is difficult to reproduce, scales poorly, and prevents systematic exploration of the enormous combinatorial space of materials, twist angles, and interfacial conditions. AutoLab is an autonomous platform that translates this tacit human expertise into programmable, feedback-driven control. Instead of pressing flakes with predefined trajectories, AutoLab uses machine vision to detect polymer-wafer contact, dynamically regulates contact evolution through closed-loop actuation and temperature control, and captures high-quality flakes with the cleanliness and precision of expert manual fabrication. The system integrates perception, decision making, and motion planning into a single robotic framework, enabling reproducible stacking, wafer-level coverage, and accelerated discovery. Beyond 2D materials, AutoLab illustrates a broader paradigm for AI-native scientific automation: codifying human experimental reasoning into algorithms that interrogate data in real time, adaptively adjust instrumentation, and generate scalable, high-fidelity datasets. Such platforms could generalize to diverse research domains--quantum device fabrication, optical alignment, surface science, autonomous microscopy, and other workflows where expert intuition currently limits throughput and reproducibility. By bridging artisanal manipulation and robotic autonomy, AutoLab points toward a future where scientific discovery is accelerated by machines that not only execute instructions, but learn, respond, and collaborate with human scientists.

Biography: Dr. Yutao Li is a research associate from Department of Condensed Matter Physics and Material Science, Brookhaven National Laboratory. He has 8 years of experience in 2D material sample fabrication, and investigation in their electronic transport, optical and mechanical properties.

Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.

Location: CDS, Bldg. 725, Training Room

Join ZoomGov Meeting: https://bnl.zoomgov.com/j/1604383624?pwd=ffQ5cUPNxTI7nzClKQO6cnsNbhF9Vf.1

Meeting ID: 160 438 3624
Passcode: 558449

Visual Analytics and Machine Learning for Biomedical Imaging Diagnosis

 

Arie Kaufman

 

We present an integrated approach using visual analytics and machine learning (ML) to diagnose abnormalities in 3D radiological imaging and biological microscopes. The primary example will involve 3D virtual pancreatography (VP), a novel visualization-ML procedure and application for non-invasive diagnosis and classification of pancreatic lesions, the precursors of pancreatic cancer. Currently, non-invasive screening of patients is performed through visual inspection of 2D axis-aligned CT images, though the relevant features are often not clearly visible nor automatically detected. VP is an end-to-end visual diagnosis system that includes an ML-based automatic segmentation of the pancreatic gland and the lesions, a semi-automatic approach to extract the primary pancreatic duct, an ML-based automatic classification of lesions into four prominent types, and specialized 3D and 2D exploratory visualizations of the pancreas, lesions and surrounding anatomy. We combine volume rendering with pancreas- and lesion-centric visualizations and measurements for effective diagnosis. We designed VP through close collaboration and feedback from expert radiologists, and evaluated it on multiple real-world CT datasets with various pancreatic lesions and case studies examined by the expert radiologists. Other applications include virtual colonoscopy, COVID-19, pathology, brain neurites, etc.


Biography: Arie Kaufman is Distinguished Professor and formerChair of the Department of Computer Science at Stony Brook University, where he is also Director of the Center for Visual Computing (CVC), and Chief Scientist at the Center of Excellence in Wireless and Information Technology (CEWIT). 

He received his PhD in Computer Science at Ben-Gurion University of the Negev in 1977.   He is known for his work in visualization, graphics, virtual reality, user interfaces, multimedia, and their applications, especially in bio-medicine. He is especially well known for his work on the 3-dimensional virtual colonoscopy, a revolutionary low-risk technique for colon cancer screening, and for pioneering the use of Graphics Processing Units (GPUs) and GPU-clusters. In 2012, he presided over the development and opening of the Reality Deck, the largest virtual reality display in the world, at Stony Brook University.

Kaufman was the founding Editor in Chief of IEEE Transactions on Visualization and Computer Graphics (TVCG), co-founded the IEEE Visualization Conference and Volume Graphics series, and is currently the director of IEEE Computer Society Technical Committee on Visualization and Graphics. He is an IEEE Fellow, ACM Fellow, winner of many awards, including the IEEE Visualization Career Award, and member of the European Academy of Sciences.



Steven Skiena is inviting you to a scheduled Zoom meeting.

Topic: AI Seminar: Arie Kaufman
Time: Apr 21, 2021 10:00 AM Eastern Time (US and Canada)

Join Zoom Meeting
https://stonybrook.zoom.us/j/96017498640?pwd=SE0rdHB6ZVlCM2ZpY2RnRUxyVnR3Zz09

I will be holding an informal 2-week short optimization course, to try
to cover a few important proofs in the field. The goal will be depth
over breadth, with focus on:

 - convergence proofs for gradient descent and stochastic gradient descent
 - energy functions and continuous time optimization
 - estimate sequences and Nesterov acceleration

and, time permitting, additional topics like variance reduction,
quasi-Newton methods, and Frank-Wolfe methods. If we go super fast, we
can spend a few days at the end brainstorming interesting research
project ideas.

Details: NCS 220 6:15pm-7:45pm, Monday-Friday, Feb 7-Feb 18.

In person only, since I plan to use the whiteboard (but may be recorded)

More details will be uploaded here (notes, specific schedule):
https://sites.google.com/view/optimization-short-course/home
Abstract: Visual generation is a fundamental problem in computer vision and graphics, with applications ranging from 3D capture to content creation and image/video synthesis. Despite rapid progress in neural rendering and generative models, efficiency remains a key obstacle in practice: high-quality 3D reconstruction often depends on dense multi-view supervision; scalable 3D synthesis faces heavy optimization, training, and rendering costs; and modern image/video generators incur substantial computation as token grids grow with spatial resolution and temporal length.
This thesis targets efficient visual world modeling by improving sample efficiency in 3D reconstruction, representation efficiency in 3D generation, and computational efficiency in image/video synthesis. First, we improve sample efficiency for neural implicit surface reconstruction under sparse views by integrating multi-view stereo probability volumes as a geometric regularizer, enabling high-quality reconstruction from as few as three input images. Next, we introduce an explicit 3D representation for 3D generation, built from multi-view depth and RGB predictions with 3D Gaussian features, which enables the use of 2D generative priors while enforcing multi-view consistency via epipolar attention. We then address the computational bottleneck of image and video synthesis with importance-based token merging, using importance signals available during generation to preserve critical information while merging redundant tokens. Finally, we propose efficient mixed-resolution diffusion transformers via cross-resolution phase-aligned attention, aiming to improve attention stability under mixed token grids and support high-fidelity mixed-resolution generation.

Speaker: Haoyu Wu

Location: NCS120
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https://stonybrook.zoom.us/meeting/register/tJMvd-irqTotGtQONZqerPf_TnhXcx8t2sA1