Abstract: Graphs are a universal language of science. Molecules, materials, quantum systems, and knowledge bases can all be naturally represented as graphs. This talk explores how graph-based artificial intelligence is emerging as a powerful engine for scientific discovery. Using molecular design as a guiding example, we examine how modern graph AI enables machines not only to analyze complex scientific structures but also to generate new ones. We will discuss graph neural networks for learning predictive models of molecular properties, graph generative models for constructing novel chemical structures, and emerging multimodal graph-language models that support inverse design and synthesis planning. Together, these advances make graph AI more scalable, interpretable, and data-efficient--key capabilities for real-world scientific discovery. As artificial intelligence enters the era of foundation models, the next frontier lies in multimodal reasoning. Scientific knowledge is not purely textual; it is expressed through structures, code, and experimental data. By integrating graph representations with large language models, we move toward AI systems that can reason across multiple modalities and engage with scientific knowledge in its native forms. Looking ahead, we envision AI systems that behave less like tools and more like collaborators in the scientific process--generating hypotheses, designing candidate structures, planning experiments, interpreting results, and iteratively refining ideas through cycles of success and failure. In this vision, multimodal and agentic AI will enable scientists to explore vast and previously inaccessible design spaces, accelerating breakthroughs across domains ranging from drug discovery and materials innovation to software systems and quantum technologies.

Bio: Jie Chen is an interdisciplinary researcher working at the intersection of computing and mathematics, with a current focus on foundation models and AI agents for scientific discovery. His research integrates machine learning, statistics, scientific computing, and numerical linear algebra, with contributions spanning graph neural networks, multimodal graph LLMs, graph structure learning, scalable Gaussian processes, graph coarsening, and matrix functions. He is widely recognized for transformative contributions to graph-based deep learning and large-scale statistical modeling, and for bridging theory with real-world scientific and engineering applications. Dr. Chen has led externally funded, multi-institutional research programs supported by Shell, Evonik, and the U.S. Department of Energy, with applications in materials discovery, financial forensics, and power system resilience. He previously served as a Senior Research Scientist and Manager at IBM Research and the MIT-IBM Watson AI Lab, and as a Postdoctoral Fellow at Argonne National Laboratory. He has published extensively in top-tier AI, statistics, and applied mathematics venues, and his work has been recognized by multiple IBM Outstanding Technical Achievement Awards and the SIAM Student Paper Prize. He earned his Ph.D. in Computer Science from the University of Minnesota and his B.S. in Mathematics with honors from Zhejiang University.

Location: NCS 120
AI Institute Seminar Title: A Geometric Understanding of Deep Learning Abstract: This work introduces an optimal transportation (OT) view of generative adversarial networks (GANs). Natural datasets have intrinsic patterns, which can be summarized as the manifold distribution principle: the distribution of a class of data is close to a low-dimensional manifold. GANs mainly accomplish two tasks: manifold learning and probability distribution transformation. The latter can be carried out using the classical OT method. From the OT perspective, the generator computes the OT map, while the discriminator computes the Wasserstein distance between the generated data distribution and the real data distribution; both can be reduced to a convex geometric optimization process. Furthermore, OT theory discovers the intrinsic collaborative--instead of competitive--relation between the generator and the discriminator, and the fundamental reason for mode collapse. We also propose a novel generative model, which uses an autoencoder (AE) for manifold learning and OT map for probability distribution transformation. This AE-OT model improves the theoretical rigor and transparency, as well as the computational stability and efficiency; in particular, it eliminates the mode collapse. The experimental results validate our hypothesis, and demonstrate the advantages of our proposed model.
Virtual Job Fair for New Stony Brook Graduates & Experienced Alumni Using a platform called Career Fair Plus, participants will be able to schedule 10-minute video meetings with participating employers of interest to them. Recent graduates and alumni can register and learn more about how the fair will be run by registering on Handshake.
Join us at the Center for Excellence in Learning and Teaching (CELT) for an interactive Zoom workshop on Generative AI designed for faculty and staff interested in enhancing teaching and assessment practices, increasing student engagement, and navigating the rapidly evolving landscape of AI tools. Participants will be introduced to common AI tools, explore potential instructional uses, and discuss key considerations such as academic integrity, transparency, and equity.
Register now: https://stonybrook.zoom.us/meeting/register/6js1eP64T1ys8tyU57EJ7Q#/registration
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Join the Center of Excellence in Wireless and Information Technology (CEWIT) and their co-host IEEE-USA for a livestream panel discussion on Generative Artificial Intelligence (Gen AI). In this engaging livestream, we will dive into the technologies that continue to transform what is possible and explore the dynamic intersection of innovation, creativity, ethics, and Gen AI.

CEWIT is joined by Stony Brook University experts who will provide their insights and perspectives on this rapidly changing technology.

Meet the Panel

Laura Lindenfeld, PhD

Executive Director
Alan Alda Center for Communicating Science®
Dean
School of Communication & Journalism
BIO

Margaret Schedel, PhD
Associate Professor
Composition and Computer Music
Co-Founder
Lyrai
BIO

Steven Skiena, PhD

Interim Director
AI Innovation Institute
Distinguished Professor
Computer Science
BIO

Vivian Zhang
CTO/School Director
NYC Data Science Academy
Chief Data Officer
GoDental.ai
BIO


Register here.
Title:Deep Contextual Modeling for Natural Language Understanding, Generation, and Grounding Zoom instructions: Join Zoom Meeting https://stonybrook.zoom.us/j/645050299?pwd=TVJVRkc3dlhxdDF5d00xWGlDQkovZz09 Meeting ID: 645 050 299 Password: 810247 One tap mobile +16468769923,,645050299#,,#,810247# US (New York) +13126266799,,645050299#,,#,810247# US (Chicago) Dial by your location +1 646 876 9923 US (New York) +1 312 626 6799 US (Chicago) +1 301 715 8592 US +1 346 248 7799 US (Houston) +1 408 638 0968 US (San Jose) +1 669 900 6833 US (San Jose) +1 253 215 8782 US Meeting ID: 645 050 299 Password: 810247 Find your local number: https://stonybrook.zoom.us/u/aemTiJMXu6 Abstract: Natural language is a fundamental form of information and communication. In both human-human and human-computer communication, people reason about the context of text and world state to understand language and produce language response. In this talk, I present several deep neural network based systems that first understand the meaning of language grounded in various contexts where the language is used, and then generate effective language responses in different forms for information access and human-computer communication. First, I will introduce Speaker Interaction RNNs for addressee and response selection in multi-party conversations based on explicit representations for different discourse participants. Then, I will present a text summarization approach for generating email subject lines by optimizing quality scores in a reinforcement learning framework. Finally, I will show an editing-based multi-turn SQL query generation system towards intelligent natural language interfaces to databases. Bio:Rui Zhang is a final year Ph.D. student at Yale University advised by Professor Dragomir Radev. His research interest lies in various natural language processing problems in understanding, generation, and grounding. He has been working on (1) End-to-End Neural Modeling for Entities, Sentences, Documents, and Multi-party Multi-turn Dialogues, (2) Text Summarization for Emails, News, and Scientific Articles, (3) Cross-lingual Information Retrieval for Low-Resource Languages, (4) Context-Dependent Text-to-SQL Semantic Parsing in Human-Computer Interaction. Rui Zhang has published papers and served as Program Committee members at top-tier NLP and AI conferences including ACL, NAACL, EMNLP, AAAI, CoNLL. During his Ph.D., He has done research internships at IBM Thomas J. Watson Research Center, Grammarly Research, and Google AI. He was a graduate student at the University of Michigan and got his bachelor's degrees at both the University of Michigan and Shanghai Jiao Tong University from the UM-SJTU Joint Institute.
Stony Brook University Northern California Alumni Chapter - Institute for AI-Driven Discovery and Innovation Panel

Join us for a Northern California Alumni and Friends luncheon followed by a panel discussion, celebrating the Institute for AI-Driven Discovery and Innovation, moderated by Fotis Sotiropoulos, Dean, College of Engineering and Applied Sciences.

Panel Discussion with:
Richard Bravman '78, Chief Strategy Officer, Affinity Solutions
Jalal Mahmud, PhD '08, Master Inventor, IBM Watson
Reza Raji '86, CEO, Xenio Systems
Andrew Protter, PhD '83, Chief Scientific Officer, Auansa Inc.

Moderated by:
Fotis Sotiropoulos, Dean, College of Engineering and Applied Sciences

Click here for more information and to register.


Date of Event

Joel H. Saltz, MD, PhD
SUNY Distinguished Professor Cherith Professor and Founding Chair
Department of Biomedical Informatics
Stony Brook University

Apostolos K. Tassiopoulos, MD, FACS
Professor of surgery and vice chair for quality and outcomes Chief of the Division of Vascular and Endovascular Surgery
Director of the Stony Brook Vascular Center Stony Brook Medicine

Title: Clinical applications of artificial intelligence to improve diagnosis and risk stratification for patients with aortic aneurysms

Time: Wednesday, Feb 17, 2021 3 pm - 4 pm

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AI is everywhere -- and so are the privacy concerns that come with it. At its core, the most common forms of AI we use today are online digital services -- and thus inherit the usual privacy risks of any internet-based tool. However, AI also introduces a set of unique and evolving risks. We'll take a closer look at one of the newest developments in this area: indirect prompt injection -- a technique that can trick AI tools into revealing or extracting private information. You'll learn how this emerging form of AI manipulation works, why it matters, and how to protect yourself -- as well as how similar techniques are being used in academic contexts to manipulate systems and even mislead researchers.

Register for this Zoom workshop.