The Renaissance School Of Medicine Department of Scientific Affairs and its Single Cell Genomics facility are excited to host a special seminar and discussion on AI and single cell genomics analysis:

With the decreasing cost of sequencing, many biobanks and large research cohorts have moved to whole genome sequencing (WGS) and single-cell RNA-seq. However, making use of this deluge of data remains a challenge. I will discuss statistical and deep learning approaches that we are exploring to address the challenge of noncoding variant interpretation, including our work as part of the Alzheimer's disease sequencing project.

Speaker: David A. Knowles, PhD. Asst. Professor of Computer Science, Interdisciplinary Appointee in Systems Biology, Columbia University Core Faculty Member, New York Genome Center

Join us in person: Health Science Tower Level 3, Lecture Hall 5

The event will take place on Zoom and will feature two distinguished guest speakers: SBU alumnus, Velchamy Sankarlingam, president of Product and Engineering at Zoom, and Simeon Ananou, vice president for Information Technology and CIO at Stony Brook University. The discussion will be moderated by Haresh Gurnani, dean of the College of Business at Stony Brook University.

Exploring AI's Impact on Communication and Connection

Artificial Intelligence (AI) has rapidly evolved, becoming an integral part of various industries, including education and business. This event aims to delve into how AI is reshaping the way we learn and work, particularly in enhancing communication and fostering human connections. Velchamy Sankarlingam, an SBU alumnus and a key figure at Zoom, will share his insights on how AI-driven tools are revolutionizing virtual communication platforms, making interactions more seamless and effective.

Simeon Ananou, with his extensive experience in information technology, will provide a perspective on how AI is being integrated into educational institutions to improve learning outcomes and administrative efficiency. His role at Stony Brook University places him at the forefront of implementing innovative technologies that benefit both students and staff.

A Conversation Led by Expertise

Dean Haresh Gurnani, known for his leadership and expertise in business education, will guide the conversation, ensuring that the discussion remains focused on the practical implications of AI. He will explore how AI is not only boosting productivity but also enriching overall experiences in the workplace and educational settings. The event will include an interactive Q&A session, allowing attendees to engage directly with the speakers and gain deeper insights into the topics discussed.

As AI continues to develop, events like this are crucial for understanding its impact and potential. Stony Brook University's College of Business is committed to providing platforms for such important discussions, fostering an environment where innovation and education intersect.

This event is open to all. Please visit https://www.givecampus.com/schools/StonyBrookUniversity/events/artificial-intelligence-reshaping-learning-and-work to register.

Abstract: Materials used in extreme environments, such as high temperatures, irradiation, and stress, often fail due to rapid defect generation and microstructural evolution, and traditional approaches cannot explore the vast design space needed for next-generation alloys. I will present a machine learning framework powered by massive computing that links individual atomic motion to microstructural evolution. Neural network kinetics models trained on first-principles data map vacancy barrier spectra and capture correlated diffusion in multicomponent alloys, revealing design strategies to suppress radiation damage. At larger scales, simulations uncover dislocation patterning and distinguish between confined and extended slip bands, offering new insight into collective dislocation motion and deformation instabilities. By integrating AI-driven modeling, large-scale computing, and experimental validation, my research goal is to accelerate the discovery of damage-tolerant materials and advance fundamental understanding of defect physics in extreme environments.

Speaker Bio: Penghui Cao is an Associate Professor in Mechanical and Aerospace Engineering at the University of California, Irvine, with a joint appointment in Materials Science and Engineering. He received his PhD in mechanical engineering from Boston University and subsequently worked as a Postdoctoral Associate in the Department of Nuclear Science and Engineering at the Massachusetts Institute of Technology from 2014 to 2018. Dr. Cao's research focuses on understanding the fundamental mechanisms that govern radiation responses and microstructure evolution in materials, and on developing advanced alloys for high-performance nuclear energy systems. His lab advances computational and modeling algorithms, integrates advanced manufacturing techniques to tailor microstructures, and leverages state-of-the-art electron microscopy to characterize and assess underlying mechanisms. He is the recipient of the DOE Early Career Research Program Award and the UCI Samueli School's Mid-Career Award for Faculty Excellence in Research.

Location: Institute for Advanced Computational Science, Seminar Room

*This seminar will be held in-person and online. Zoom link below*

Join Zoom Meeting: https://stonybrook.zoom.us/j/96410717491?pwd=3WGMwbLYNMSbI2IF160VXkvv2JmCQ1.1

Meeting ID: 964 1071 7491
Passcode: 399333

Please join us for the next CSE 600 Seminar this Friday, October 11th, at 2:30pm in New Computer Science 120 given by Assistant Professor Mohammad Javad Amiri. Abstract: Today's distributed transaction processing systems must deal with untrustworthy environments where multiple mutually distrustful entities communicate with each other, and maintain data on untrusted infrastructure. Byzantine Fault-Tolerant (BFT) protocols have recently been extensively used by distributed transaction processing systems to establish consensus on the order of transactions. However, the proliferation of different BFT protocols has made it difficult to navigate the BFT landscape, let alone determine the protocol that best meets application needs. Moreover, as novel smart contracts, modern hardware, and new cloud platforms arise, future-proof distributed transaction processing systems need to be designed with full-stack adaptivity in mind. This talk presents our vision for a reinforcement learning (RL)-based distributed transaction processing system that adjusts effectively in real-time to changing fault scenarios and workloads.
The overall purpose of this seminar is to bring together people with interests in Computer Vision theory and techniques and to examine current research issues. This course will be appropriate for people who already took a Computer Vision graduate course or already had research experience in Computer Vision. To enroll in this course, you must either: (1) be in the PhD program or (2) receive permission from the instructors.

Each seminar will consist of multiple short talks (around 10 minutes) by multiple people. Students can register for 1 credit for CSE 656. Registered students must attend and present a minimum of 2 or 3 talks. Everyone else is welcome to attend. Fill in https://forms.gle/pCVXovgfMfQwGqG38 to subscribe to our mailing list for further announcement.

Abstract: Implicit functions have long been a fundamental representation for both 2D and 3D objects in computer graphics, playing a significant role in the field's early development. With the rise of 3D deep learning and the rapid advancement of neural rendering techniques, implicit representations of 3D shapes have regained significant attention in recent years. In this talk, I will present several recent research projects focusing on implicit function-based 3D reconstruction and neural rendering. Furthermore, I will discuss potential future developments in this dynamic and rapidly evolving field.

Biography: Ying He is an Associate Professor at the College of Computing and Data Science, Nanyang Technological University, where he also serves as the Director of the Centre for Augmented and Virtual Reality. His research interests lie in geometric computation and analysis, with applications spanning computer graphics, 3D vision, computer-aided design, multimedia, and wireless sensor networks. Dr. He is an active member of the technical program committees for major conferences on geometric modeling and has served on the editorial boards of IEEE Transactions on Visualization and Computer Graphics, Computer Graphics Forum, and Computational Visual Media. He has also taken on key leadership roles as General/Program Co-Chair for several conferences, including Shape Modeling International (SMI) 2022, Solid and Physical Modeling (SPM) 2022 & 2023, Geometric Modeling and Processing (GMP) 2014 & 2021, and Computational Visual Media (CVM) 2020. For more information, please visit https://personal.ntu.edu.sg/yhe/

Location: NCS 115

As generative AI tools become increasingly prevalent in education, their impact on collegiate writing raises important questions about creativity, academic integrity, and effective teaching practices. This panel brings together faculty and students to share perspectives on the opportunities and challenges that AI presents in an academic setting. Through an open dialogue, participants will engage in meaningful conversations, allowing for a deeper understanding of each other's viewpoints and fostering collaboration. Students and faculty will explore diverse ways AI can be used in teaching and learning and seek solutions to utilize AI writing tools ethically. This exchange aims to build a community of trust and shared knowledge, ensuring that AI's role in education is both innovative and responsible.

Register here: https://stonybrook.zoom.us/meeting/register/tJAqdOitpjIpHtDGAsGBfEb3ah0YIzhIJolN

You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.

Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.

Embodied Intelligence at Scientific User Facilities

Abstract: This presentation explores the active work integrating artificial intelligence and robotics at the National Synchrotron Light Source II, and a perspective for the future. Through various case studies, we highlight the optimization of operations, improved experimental outcomes, and the orchestration of distributed multimodal experiments. This ongoing development includes collaborators from across the light and neutron sources in the DOE complex. We will elaborate on the open-source Bluesky project, and its capabilities to support adaptive and autonomous experiments. Additionally, we will discuss how Bluesky can be integrated with open-source robotic control software to unlock new flexible automation for autonomous scientific research, which scales to new experiments and continues to leverage human ingenuity.

Biography: Dr. Phillip M. Maffettone is an Associate Computational Scientist in the Data Science and Systems Integration Division at NSLS-II. His research focuses on accelerating scientific discovery at user facilities through the integration of robotics, artificial intelligence (AI), and advanced experiment orchestration systems. He leads the N3XTware project, constructing the software architecture for the next 12 beamlines to be built at NSLS-II. Prior to this he built the brain on the world's first mobile robotic scientist at the University of Liverpool, and later spearheaded the machine learning platform for a biotechnology start-up, BigHat Biosciences. He holds a DPhil in Inorganic Chemistry from the University of Oxford and a B.S. in Chemical Engineering from the University at Buffalo.

Location: CDS, Bldg. 725, Training Room

Link: https://bnl.zoomgov.com/j/16049713 31?pwd=nc5CV3cOFrdYxordFieP W07tIDmwYb.1

Meeting ID: 160 497 1331
Passcode: 289875

Submit an abstract celebrating research, new discoveries and achievements in medicine and science!

We encourage faculty, nurse practitioners, post-doctoral fellows, fellows, residents, medical students, graduate students and undergraduate students to submit an abstract. Original research, case reports and case series are welcome.

Abstract submission deadline: FEBRUARY 7, 2025

For more details, visit here.