ICB&DD 19th Annual Symposium

Iwao Ojima, Director, ICB&DD
Ivet Bahar Chair, Organizing Committee
Dima KozakovCo-Chair, OrganizingCommittee

There will be poster sessions on projects conducted in the ICB&DD member's laboratories aswell as other laboratories in the area. Awards will be given to the best three posters.

Please see the link for the registration and poster sessions in:
https://www.stonybrook.edu/commcms/icbdd/https://forms.gle/Wh4UzVx9U4HWStXb8

Abstract: Materials used in extreme environments, such as high temperatures, irradiation, and stress, often fail due to rapid defect generation and microstructural evolution, and traditional approaches cannot explore the vast design space needed for next-generation alloys. I will present a machine learning framework powered by massive computing that links individual atomic motion to microstructural evolution. Neural network kinetics models trained on first-principles data map vacancy barrier spectra and capture correlated diffusion in multicomponent alloys, revealing design strategies to suppress radiation damage. At larger scales, simulations uncover dislocation patterning and distinguish between confined and extended slip bands, offering new insight into collective dislocation motion and deformation instabilities. By integrating AI-driven modeling, large-scale computing, and experimental validation, my research goal is to accelerate the discovery of damage-tolerant materials and advance fundamental understanding of defect physics in extreme environments.

Speaker Bio: Penghui Cao is an Associate Professor in Mechanical and Aerospace Engineering at the University of California, Irvine, with a joint appointment in Materials Science and Engineering. He received his PhD in mechanical engineering from Boston University and subsequently worked as a Postdoctoral Associate in the Department of Nuclear Science and Engineering at the Massachusetts Institute of Technology from 2014 to 2018. Dr. Cao's research focuses on understanding the fundamental mechanisms that govern radiation responses and microstructure evolution in materials, and on developing advanced alloys for high-performance nuclear energy systems. His lab advances computational and modeling algorithms, integrates advanced manufacturing techniques to tailor microstructures, and leverages state-of-the-art electron microscopy to characterize and assess underlying mechanisms. He is the recipient of the DOE Early Career Research Program Award and the UCI Samueli School's Mid-Career Award for Faculty Excellence in Research.

Location: Institute for Advanced Computational Science, Seminar Room

*This seminar will be held in-person and online. Zoom link below*

Join Zoom Meeting: https://stonybrook.zoom.us/j/96410717491?pwd=3WGMwbLYNMSbI2IF160VXkvv2JmCQ1.1

Meeting ID: 964 1071 7491
Passcode: 399333



Date of Event

Joel H. Saltz, MD, PhD
SUNY Distinguished Professor Cherith Professor and Founding Chair
Department of Biomedical Informatics
Stony Brook University

Apostolos K. Tassiopoulos, MD, FACS
Professor of surgery and vice chair for quality and outcomes Chief of the Division of Vascular and Endovascular Surgery
Director of the Stony Brook Vascular Center Stony Brook Medicine

Title: Clinical applications of artificial intelligence to improve diagnosis and risk stratification for patients with aortic aneurysms

Time: Wednesday, Feb 17, 2021 3 pm - 4 pm

Join Zoom Meeting
https://stonybrook.zoom.us/j/95617197636?pwd=KytzZ2pVRG9SZGpKZUtpNXJISj...
Meeting ID: 956 1719 7636 Passcode: 924293

The Natural Language Processing Reading Group at Stony Brook University meets weekly to discuss recent research papers in NLP and related fields.
Join the Google Group here.

Title: J-Space

Abstract: The rise of the term mechanistic interpretability has accompanied increasing interest in understanding neural models -- particularly language models. However, this jargon has also led to a fair amount of confusion. So, what does it mean to be mechanistic? We describe four uses of the term in interpretability research. The most narrow technical definition requires a claim of causality, while a broader technical definition allows for any exploration of a model's internals. However, the term also has a narrow cultural definition describing a cultural movement. To understand this semantic drift, we present a history of the NLP interpretability community and the formation of the separate, parallel mechanistic interpretability community. Finally, we discuss the broad cultural definition -- encompassing the entire field of interpretability -- and why the traditional NLP interpretability community has come to embrace it. We argue that the polysemy of mechanistic is the product of a critical divide within the interpretability community.

Location: NCS 220

Zoom Link: https://stonybrook.zoom.us/j/92942833294?pwd=ysKMaQx7Hp0lkq5nOb3zJ9ivNZVvLv.1&jst=2
Optimization and Machine Learning - presented by Yifan Sun

Abstract: Optimization is a growing topic of interest in the machine learning community. It starts out as an option to check in Tensorflow (SGD? Adam? Adagrad?), but as we get more into the how and why of these options, we uncover many fundamental principles relating to operations research, control theory, and dynamical systems, dating back as far as the Cold World era. 

In this talk I will give a broad overview of some of the important optimization themes in machine learning. I will try to give connections between tools we are used to seeing in popular packages 
and fundamental optimization concepts like duality, convexity, contractive operators, etc. While we cannot hope to completely cover this diverse research area, I hope to provide a glimpse of this exciting research area that is permeating more and more into the machine learning world. 

Bio: Yifan Sun received her PhD in Electrical Engineering from the University of California Los Angeles in 2015, with research focusing on convex optimization and semidefinite programming. She was then Technicolor Research and Innovation, focusing on machine learning and 
data science applications. More recently, she completed two postdocs focusing on optimization, at the University of British Columbia in Vancouver, Canada and INRIA, in Paris, France.
Hieu Le presents Incorporating Physical Illumination Constraints into Deep Learning Shadow Detection and Removal (PhD Proposal)

Shadows provide useful cues to analyze the scene but also hamper many computer vision algorithms such as image segmentation, object detection or tracking. For those reasons, shadow detection and shadow removal have been well studied topics in computer vision. Early approaches for shadow detection and removal focus on physical illumination models of shadows. These methods can express, identify, and remove shadows in a physically plausible manner. However, these models are often hard to optimize and slow in inference due to reliance on hand-designed image features. On the other hand, recent deep-learning approaches have achieved breakthroughs in performances for both shadow detection and removal. They learn to extract useful features automatically through training while being extremely efficient in computation. However, these models are data-dependent, opaque and ignore the physical aspects of shadows.

We propose to incorporate physical illumination constraints into deep-learning frameworks. Thus the mapping learned by the deep-network closely follows the physics of shadows, enabling the network to systematically and realistically modify shadows in images. For shadow detection, we present a novel GAN framework in which the generator can generate realistic images with attenuated shadows that can be used to train a shadow detector. For shadow removal, we propose a method that uses deep-networks to estimate the unknown parameters for a shadow image formation model that removes shadows. The system outputs shadow-free images in high-quality with no image artifacts and achieves state-of-the-art shadow removal performance. Lastly, we propose a system trained without the need for any shadow-free images in which physical constraints play pivotal roles that enable training the networks.

For Zoom information, please email events@cs.stonybrook.edu.

Abstract: Recent progress in Large Language Models (LLMs) has transformed text and code generation, yet models still falter on scientific reasoning where correctness, constraints, and physical consequences are critical. This talk explores how formal LLM reasoning can advance symbolic scientific modeling. First, our PDE-Controller formalizes informal PDEs (Partial Differential Equations), synthesizes solver-ready code, and plans subgoals to tackle nonconvex control via interactions with external solvers. Second, our Lean Finder accelerates scientific formalization via a semantics-aware search engine for Lean/Mathlib that retrieves relevant theorems, outperforming GPT models and gaining significant traction in the AI-for-math community. Through these efforts, we aim to design a semantics-first LLM that autoformalizes informal scientific problems into machine-checked specifications and synthesizes solver-ready code. This closes the loop between formal analysis and LLM reasoning, ultimately surpassing human heuristics for scientific discovery.

Bio: Dr. Wuyang Chen is a tenure-track Assistant Professor in Computing Science at Simon Fraser University. He is also a visiting research scientist at Microsoft. Previously, he was a postdoctoral researcher in Statistics at the University of California, Berkeley, advised by Professor Michael Mahoney. He obtained his Ph.D. in Electrical and Computer Engineering from the University of Texas at Austin in 2023, advised by Professor Atlas Wang. Dr. Chen's research focuses on integrating AI methods with physical knowledge, scientific machine learning, and theoretical understanding of deep networks. Dr. Chen has published papers at CVPR, ECCV, ICLR, ICML, NeurIPS, and other top conferences. Dr. Chen's research has been recognized by the US NSF newsletter, two Doctoral Dissertation Awards from INNS and iSchools, AAAI New Faculty Highlights, and NVIDIA Academic Grant Award. Dr. Chen also hosted and co-organized many conference workshops at NeurIPS, ICLR, CVPR.

Location: NCS 120

AI on Campus: Your Thoughts, Your Future

Join the Conversation: Share Your Thoughts about Learning, Academics, and AI

The world of college is changing fast, and Artificial Intelligence (AI) is at the center of it. We are part of the Institute on AI, Pedagogy, and the Curriculum with AAC&U, and we need to hear from the people AI affects most: you!

This is an open discussion for all students to share their honest experiences, their top concerns, and their best ideas about AI in our academic environment. We'll be diving into these key questions:

  • How can AI actually make learning better or easier? What opportunities do you see for using AI tools to enhance your assignments, research, or skills?

  • What are your biggest worries about AI? Is it about cheating, being graded fairly, or preparing for the job market? How is AI impacting your workload or stress levels?

  • What specific tools, workshops, or policies would help you use AI responsibly and successfully? (Think training, software, or clear rules.)

Dates/Times:

  • Wednesday, 2/4 at 2pm

  • Thursday, 2/5 at 12pm

Please register in advance for the Zoom link.

Can't Make It? Share Your Feedback!

Don't worry if you can't attend! You can still share your thoughts via video in our AI Zoom Room or via email: rose.tirotta-esposito@stonybrook.edu.

Videos will not be shared publicly and comments will only be shared in aggregate.

Your voice matters. Come tell us how AI is affecting your studies, your stress, and your success!

  • Dr. Rose Tirotta-Esposito (Assistant Provost; Director of CELT)

  • Dr. Elizabeth Hewitt (Associate Professor in the Department of Technology and Society (DTS) in the College of Engineering and Applied Sciences)

  • Chris Kretz (Associate Librarian and Head of Academic Engagement at SBU Libraries)

  • Prof. Rajiv Lajmi (Assistant Professor in the School of Health Professions and Chair of Applied Health Informatics)

  • Dr. Matthew Salzano (Assistant Professor in the Department of Communication in the School of Communication and Journalism)

AI for Conservation: AI and Humans Combating Extinction Together by Daniel I. Rubenstein of Princeton University

ABSTRACT: The state of our planet is not good. We have lost more than 60% of the world's wildlife. Stopping the decline remains a challenge, especially since acquiring appropriate knowledge is expensive, time consuming and risky. Visual observations following the fates of a few individuals was the currency of the realm. But GPS technology and now machine learning provide a non-invasive scalable alternative. Photographs, taken by field scientists, tourists, automated cameras and incidental photographers, are the most abundant source of data on wildlife today. Wildbook, a project of tech for conservation coordinated by a non-profit Wild Me, is an autonomous computational system that starts from massive collections of images and, by detecting various species of animals and identifying individuals, combined with sophisticated data management, turns them into high-resolution information databases, enabling scientific inquiry, conservation and citizen science.

BIO: Dan Rubenstein is the Class of 1877 Professor of Zoology. He is currently Director of Princeton's Environmental Studies Program and is former Chair of Princeton University's Department of Ecology and Evolutionary Biology and Director of Princeton's Program in African Studies. He is a behavioral ecologist who studies how environmental variation and individual differences shape social behavior, social structure, sex
roles and the dynamics of populations. He has special interests in all species of wild horses, zebras and asses, and has done field work on them throughout the world identifying rules governing decision-making, the emergence of complex behavioral patterns and how these understandings influence their management
and conservation. In Kenya he also works with pastoral communities to develop and assess impacts of various grazing strategies on rangeland quality, wildlife use and livelihoods. He has also developed a scout program for gathering data on Grevy's zebras and created curricular modules for local schools to raise awareness about the plight of this endangered species. He engages people as 'Citizen Scientists' and has recently extended his work to measuring the effects of environmental change, including issues pertaining to the global commons
and changes wrought by management and by global warming, on behavior.