The 39th Annual AAAI Conference on Artificial Intelligence will be held from February 25 to March 4, 2025 in Philadelphia, Pennsylvania, USA. More information can be found here.
Abstract: In this talk, we take a step back and argue that many varied and seemingly unrelated attacks on the web are actually symptoms of one deeper problem that has existed since the web's inception. Whether it is attacks due to expired domain names, cloaking done by malicious websites, malvertising, or even our growing distrust of the news can be largely attributed back to the issue of stateless linking. Stateless linking refers to the absence of any integrity guarantees between the time that a link for a remote resource was created, to a future time when this link is resolved by web clients. We draw on 10+ years of research to demonstrate how stateless linking and the resulting lack of content integrity is the true culprit for many of our past, current, and likely future web problems. Successfully tackling this one really challenging problem, has the potential of solving many of our web woes.
Bio: Nick Nikiforakis is affiliated with the National Security Institute. He received his PhD in Computer Science from KU Leuven in Belgium. He received his MSc, in Parallel and Distributed Systems and BSc in Computer Science from the University of Crete, Greece. His research focuses on web security and privacy, software security, and intrusion detection.
Location: NCS 120
Bio: Nick Nikiforakis is affiliated with the National Security Institute. He received his PhD in Computer Science from KU Leuven in Belgium. He received his MSc, in Parallel and Distributed Systems and BSc in Computer Science from the University of Crete, Greece. His research focuses on web security and privacy, software security, and intrusion detection.
Location: NCS 120
The overall purpose of this seminar is to bring together people with interests in Computer Vision theory and techniques and to examine current research issues. This course will be appropriate for people who already took a Computer Vision graduate course or already had research experience in Computer Vision. To enroll in this course, you must either: (1) be in the PhD program or (2) receive permission from the instructors.
Each seminar will consist of multiple short talks (around 10 minutes) by multiple people. Students can register for 1 credit for CSE 656. Registered students must attend and present a minimum of 2 or 3 talks. Everyone else is welcome to attend. Fill in https://forms.gle/pCVXovgfMfQwGqG38 to subscribe to our mailing list for further announcement.
Each seminar will consist of multiple short talks (around 10 minutes) by multiple people. Students can register for 1 credit for CSE 656. Registered students must attend and present a minimum of 2 or 3 talks. Everyone else is welcome to attend. Fill in https://forms.gle/pCVXovgfMfQwGqG38 to subscribe to our mailing list for further announcement.
Abstract:
Coarse grained (CG) models alleviate the drawbacks of all-atom simulations. The latter still pose challenges because they are computationally expensive and give access to limited spatiotemporal scales, despite the use of modern high-performance computing clusters. CG models ignore some of the atomistic degrees of freedom, leading to fewer interatomic interactions, hence less computing time. Introducing such models emphasizes the need to properly manage these multiple scales, by carefully deriving potentials and reconstructing conformations from their CG representations, usually with the help of Machine Learning. Following a bottom-up and force matching approach, we train a Physics-Informed Neural Network to extract the CG force field parameters from all-atom simulation data. We verify our approach by applying it to fibrin monomers to study multiple-fibrin polymerization in solution at the microsecond scale, after modifying the force field to incorporate further non-bonded interactions, not present in the training data. Access to these scales will allow us to study the effects of some of the molecules' components. Furthermore, we modify recent solutions in data-driven protein backmapping. Taking advantage of the developments in graph neural networks and variational inference, we introduce an intermediate step in the all-atom reconstruction of a molecule given its CG configuration, in an attempt to more accurately de-coarsen structures whose atom-to-CG-beads ratio is very high. The combined effect of our new forward and inverse coarse graining methodology will enable the in silico study of many phenomena that are highly dynamic and intrinsically multiscale.
Bio:
Georgios Kementzidis is a third year PhD student in the Department of Applied Mathematics and Statistics at Stony Brook University. His advisor is Dr. Yuefan Deng. His research interests lie at the intersection of Computational Science, molecular dynamics (MD) simulations, and Machine Learning (ML) applications to Computational Biophysics. He is particularly interested in coarse-graining and multi-scale simulations.
*Note: this seminar will be held in-person (food provided on a first-come, first serve basis) and online*
Join Zoom Meeting https://stonybrook.zoom.us/j/99510099036?pwd=EyowuLBGvUVLZDBlG6F6chkMICFOZ7.1
Meeting ID: 995 1009 9036
Passcode: 132419
Coarse grained (CG) models alleviate the drawbacks of all-atom simulations. The latter still pose challenges because they are computationally expensive and give access to limited spatiotemporal scales, despite the use of modern high-performance computing clusters. CG models ignore some of the atomistic degrees of freedom, leading to fewer interatomic interactions, hence less computing time. Introducing such models emphasizes the need to properly manage these multiple scales, by carefully deriving potentials and reconstructing conformations from their CG representations, usually with the help of Machine Learning. Following a bottom-up and force matching approach, we train a Physics-Informed Neural Network to extract the CG force field parameters from all-atom simulation data. We verify our approach by applying it to fibrin monomers to study multiple-fibrin polymerization in solution at the microsecond scale, after modifying the force field to incorporate further non-bonded interactions, not present in the training data. Access to these scales will allow us to study the effects of some of the molecules' components. Furthermore, we modify recent solutions in data-driven protein backmapping. Taking advantage of the developments in graph neural networks and variational inference, we introduce an intermediate step in the all-atom reconstruction of a molecule given its CG configuration, in an attempt to more accurately de-coarsen structures whose atom-to-CG-beads ratio is very high. The combined effect of our new forward and inverse coarse graining methodology will enable the in silico study of many phenomena that are highly dynamic and intrinsically multiscale.
Bio:
Georgios Kementzidis is a third year PhD student in the Department of Applied Mathematics and Statistics at Stony Brook University. His advisor is Dr. Yuefan Deng. His research interests lie at the intersection of Computational Science, molecular dynamics (MD) simulations, and Machine Learning (ML) applications to Computational Biophysics. He is particularly interested in coarse-graining and multi-scale simulations.
*Note: this seminar will be held in-person (food provided on a first-come, first serve basis) and online*
Join Zoom Meeting https://stonybrook.zoom.us/j/99510099036?pwd=EyowuLBGvUVLZDBlG6F6chkMICFOZ7.1
Meeting ID: 995 1009 9036
Passcode: 132419
Join Stony Brook University's Center for Excellence in Learning and Teaching (CELT) for a boot camp on how to use AI to enhance your teaching and courses. This event will demonstrate how ChatGPT, Microsoft Copilot, NotebookLM, and other generative AI platforms can support you in crafting learning objectives, writing exam questions, composing rubrics, and designing course content such as lesson plans, in-class activities, instructional videos, and more.
https://stonybrook.zoom.us/j/92511854285?pwd=QRTHfULqHMWxJYoVyt3piOhNxWLfvs.1
https://stonybrook.zoom.us/j/92511854285?pwd=QRTHfULqHMWxJYoVyt3piOhNxWLfvs.1
Last day of finals for 2019 Fall Semester: https://www.stonybrook.edu/commcms/registrar/registration/exams
Abstract:
Many real world complex problems are multi-step reasoning tasks. These range from analytic tasks such as answering questions to automation tasks where agents complete tasks on behalf of users.. Evaluation, datasets, and models for such tasks can be unreliable for multiple reasons. (i) Datasets often have annotation artifacts and biases, allowing models to take reasoning shortcuts. Such shortcuts can allow models to make effective guesses -- or, in a sense, cheat -- to achieve high performance without any multi-step reasoning. This issue is further exacerbated for complex tasks because as the number of the required reasoning steps increases, so do the avenues for bypassing those steps. (ii) Models trained on such dataset/s learn to solve the task by taking reasoning shortcuts instead of proper multi-step reasoning. As a result, these models are not robust (reliable) when evaluated in an out-of-distribution evaluation setting. (iii) Lastly, recent works have shown that language models can solve complex multi-step tasks by producing a step-by-step explanation without any training. However, these methods often hallucinate factually incorrect (i.e., unreliable) explanations when posed with knowledge-intensive tasks.
I address these challenges by carefully characterizing the requirements of robust multi-step reasoning and designing reliable evaluation datasets and training methods that necessitate thorough multi-step reasoning. In DiRe, I first formalize and introduce Disconnected Reasoning, i.e., reasoning that allows models to arrive at the correct answer by bypassing necessary reasoning steps, and use this formalization to measure how much multi-step reasoning a model does on a dataset. In MuSiQue, I built a multi-step reasoning dataset for QA from scratch that avoids cheatability via disconnected reasoning, providing a more reliable evaluation. In TeaBReaC, I developed a synthetically generated multi-step QA pretraining dataset designed to force models to avoid disconnected reasoning and learn reliable multi-step reasoning. In IRCoT, I address the reliability of model-generated multi-step reasoning chains by interleaving models' step-by-step reasoning with a step-by-step retrieval from an external corpus, resulting in more factually correct reasoning. Finally, in AppWorld, I built a multi-step reasoning dataset that requires highly interactive problem-solving in an environment carefully designed to ensure models need thorough reasoning to succeed.
Speaker: Harsh Trivedi
Location: NCS 220 or Zoom
https://stonybrook.zoom.us/j/99096379762?pwd=zYCJZQVxRuZd9BboscO4nlodCwsKBr.1
This year's focus is on Machine Learning, Artificial Intelligence, Blockchain and Computational Medicine. For details visit the CEWIT 2019 Conference Website.
The seminar aims to empower participants with the knowledge and skills necessary to harness AI effectively in clinical practice and research. It will equip attendees with practical insights, case studies, and interactive discussions led by experts in both AI and medicine, fostering a collaborative environment where attendee can explore how to overcome barriers and maximize the potential of AI in transforming modern healthcare delivery.
All Stony Brook Audiences Welcome.
Please note: This exciting event is open to all Stony Brook Faculty/Staff/Students. While the overarching theme for this event is the application of AI in medicine, the event is designed to bridge the professional practice gap that exists between cutting-edge AI research and its practical implementation in clinical settings, While AI holds immense promise for transforming healthcare delivery, many physicians and researchers lack the foundational knowledge and practical skills needed to effectively integrate AI into their daily practices.
THIS CONFERENCE IS FOR STONY BROOK UNIVERSITY & HOSPITAL FACULTY/STAFF & STUDENTS ONLY.
Registration link: https://cme.
joseph.cesaria@stonybrookmedicine.edu
mary.saltz@stonybookmedicine.edu
AI + Music Seminar - The meeting will consist of introductions and organizational discussions, aimed at understanding participants' interests. We'll discuss what the seminars can focus on going forward.