CSE 600 Talk: Haibin Ling - Computer Vision Research and Applications


Abstract: Having been intensively studied over half a decade, computer vision has evolved as a broad research area and become mature in many applications. In this talk, we will summarize our work in computer vision in both core vision topics and application-oriented ones. In particular, for core vision problems, we will report studies on visual tracking, visual matching and visual detection; for applications, we will describe our work on medical image analysis, intelligent transportation, smart projector systems and preliminary work on material property prediction.

Bio: Haibin Ling received the BS and MS degrees from Peking University in 1997 and 2000, respectively, and the PhD degree from the University of Maryland, College Park, in 2006. From 2000 to 2001, he was an assistant researcher at Microsoft Research Asia. From 2006 to 2007, he worked as a postdoctoral scientist at the University of California Los Angeles. In 2007, he joined Siemens Corporate Research as a research scientist. From 2008 to 2019, he worked as a faculty member of Temple University. In fall 2019, he joined the Department of Computer Science of Stony Brook University where he is currently a SUNY Empire Innovation Professor. His research interests include computer vision, augmented reality, medical image analysis, and human computer interaction. He received the Best Student Paper Award at the ACM UIST in 2003, and the NSF CAREER Award in 2014. He serves as Associate Editor for several journals including IEEE Trans. on Pattern Analysis and Machine Intelligence (PAMI), Pattern Recognition (PR), and Computer Vision and Image Understanding (CVIU). He has served or will serve as Area Chair for CVPR 2014, 2016, 2019 and 2020.
Abstract: Large language models (LLMs) may exhibit unintended or undesirable behaviors. Recent works have concentrated on aligning LLMs to mitigate harmful outputs. Despite these efforts, some anomalies indicate that even a well-conducted alignment process can be easily circumvented, whether intentionally or accidentally. Does alignment fine-tuning yield have robust effects on models, or are its impacts merely superficial? In this work, we make the first exploration of this phenomenon from both theoretical and empirical perspectives. Empirically, we demonstrate the elasticity of post-alignment models, i.e., the tendency to revert to the behavior distribution formed during the pre-training phase upon further fine-tuning. Leveraging compression theory, we formally deduce that fine-tuning disproportionately undermines alignment relative to pre-training, potentially by orders of magnitude. We validate the presence of elasticity through experiments on models of varying types and scales. Specifically, we find that model performance declines rapidly before reverting to the pre-training distribution, after which the rate of decline drops significantly. Furthermore, we further reveal that elasticity positively correlates with the increased model size and the expansion of pre-training data. Our findings underscore the need to address the inherent elasticity of LLMs to mitigate their resistance to alignment.

Speaker: Huajian Zhang

Location: CS2311
Abstract: Recent advances in Spatial Transcriptomics (ST) pair histology images with spatially resolved gene expression profiles, enabling predictions of gene expression across different tissue locations based on image patches. This opens up new possibilities for enhancing whole slide image (WSI) prediction tasks with localized gene expression. However, existing methods do not fully leverage the interactions between different tissue locations, which are crucial for accurate joint prediction. To address this, we introduce MERGE (Multi-faceted hiErarchical gRaph for Gene Expressions), which combines a multi-faceted hierarchical graph construction strategy with graph neural networks (GNN) to improve gene expression predictions from WSIs. By clustering tissue image patches based on both spatial and morphological features, and incorporating intra- and inter-cluster edges, our approach fosters interactions between distant tissue locations during GNN learning. As an additional contribution, we evaluate different data smoothing techniques that are necessary to mitigate artifacts in ST data, often caused by technical imperfections. We advocate for adopting gene-aware smoothing methods that are more biologically justified. Experimental results on gene expression prediction show that our GNN method outperforms state-of-the-art techniques on multiple metrics such as mean squared error (MSE), mean absolute error (MAE), and pearson correlation coefficient (PCC). Qualitative analysis establishes the effectiveness of MERGE in capturing cancer marker genes, thus consolidating its utility in diagnostics. As an extension of this work, we use MERGE in a setting with an uncertainty calibration branch to perform robust gene expression smoothing. We show that using patch-wise uncertainty from an uncertainty calibration model and the gene expression predictions from MERGE to enrich the ground truth gene expression matrix, results in better alignment with pathologist annotations, thus establishing that the smoothing is biologically informed.

Speaker: Aniruddha Ganguly

Location: Virtual Zoom Meeting


https://stonybrook.zoom.us/j/5474847973?pwd=Sng0Q2h1c1d3cm9sbFBmYUczMHZNdz09
Meeting ID: 547 484 7973
Passcode: 206739
University Libraries Presents: The Library AI Club is a welcoming space for students, faculty, and staff to explore AI in a supportive, low-pressure environment. Meeting every two weeks, the club features discussions, collaborative projects, guest speakers, and hands-on experiments. Join us to learn, share ideas, and engage with AI responsibly and creatively. We'd love to see you at an upcoming meeting! Location: Melville Library, Scholarly Communication Seminar Room

We invite faculty to deliver a 10-minute presentation during our afternoon session at the CELT Symposium on April 11, 2025. Showcase how you use emerging technology (i.e. AI, VR, etc.) to support diverse student populations and enhance learning experiences. Share your innovative strategies and inspire others!

CELT Symposium Theme: A New Era of Inclusivity and Innovation in Higher Education

https://t.e2ma.net/click/5w0gph/5wwlu4oe/9v63j6
The Della Pietra Lecture Series is pleased to present this lecture by Scott Aaronson:

Abstract: Yes, scalable quantum computing should actually work! Sooner than many expect, which will create a huge headache when it breaks the encryption currently used to protect the Internet. But no, we don't think quantum computing can do most of what the popular articles promise in AI and optimization and so forth. Come to this talk to learn about why!

Speaker: Scott Aaronson is Schlumberger Chair of Computer Science at the University of Texas at Austin, and founding director of its Quantum Information Center. He received his bachelor's from Cornell University and his PhD from UC Berkeley. Aaronson's research has focused mainly on the capabilities and limits of quantum computers. His first book, Quantum Computing Since Democritus, was published in 2013 by Cambridge University Press. He received the National Science Foundation's Alan T. Waterman Award, the United States PECASE Award, the Tomassoni-Chisesi Prize in Physics, and the ACM Prize in Computing, and is a Fellow of the ACM and the AAAS and a member of the National Academy of Sciences. He blogs at Shtetl-Optimized, https://www.scottaaronson.com/blog.

Location: Della Pietra Family Auditorium (SCGP 103)
Virtual Talk: Contextual Modeling for Natural Language Understanding, Generation and Grounding by Rui Zhang

Zoom link to come.

Abstract: Natural language is a fundamental form of information and communication. In both human-human and human-computer communication, people reason about the context of text and world state to understand language and produce language response. In this talk, I present 
several deep-neural-network-based systems that first understand the meaning of language grounded in various contexts where the language is used, and then generate effective language responses in different forms for information access and human-computer communication. First, 
I will introduce Speaker Interaction RNNs for addressee and response selection in multi-party conversations based on explicit representations for different discourse participants. Then, I will 
present a text summarization approach for generating email subject lines by optimizing quality scores in a reinforcement learning framework. Finally, I will show an editing-based multi-turn SQL query generation system towards intelligent natural language interfaces to databases. 

Bio: Rui Zhang is a final-year PhD student at Yale University advised by Professor Dragomir Radev. His research interest lies in various natural language processing problems in understanding, generation, and grounding. He has been working on (1) End-to-End Neural Modeling for Entities, Sentences, Documents and Multi-party Multi-turn Dialogues, (2) Text Summarization for Emails, News and Scientific Articles, (3) Cross-lingual Information Retrieval for Low-Resource Languages, (4) Context-Dependent Text-to-SQL Semantic Parsing in Human-Computer Interaction. Rui Zhang has published papers and served as Program Committee members at top-tier NLP and AI conferences including ACL, NAACL, EMNLP, AAAI and CoNLL. During his PhD, he has done research internships at IBM Thomas J. Watson Research Center, Grammarly Research and Google AI. He was a graduate student at the University of Michigan and got his Bachelor's degrees at both the University of Michigan and Shanghai Jiao Tong University from the UM-SJTU Joint Institute.
Abstract: Artificial Intelligence for Science (AI4Sci) has become a transformative approach in modeling and understanding complex physical systems, encompassing different scales such as atomistic systems and continuum systems. In atomistic systems, AI has shown potential in accelerating simulations, optimizing molecular dynamics, and predicting material and molecular properties through data-driven approaches, enhancing computational efficiency while preserving accuracy. For continuum systems, AI provides powerful tools for solving partial differential equations (PDEs) and learning physical patterns from data, capturing intricate dynamics that govern physical and engineering processes. This work explores AI methods--particularly equivariance for neural networks and neural operators--bridging atomistic and continuum representations. We analyze the implications of incorporating symmetries to improve model robustness and learning efficiency, providing a cohesive AI- driven framework for advancing scientific discovery. The findings aim to underscore the role of AI in enhancing accuracy, applicability, scalability, interopretability, and generalization across scales, from molecular simulations to physical modeling, opening pathways for next- generation applications in computational science. Biography: Wenhan Gao is a third-year Ph.D. student in Applied Mathematics at Stony Brook University, where he works under the supervision of Professor Yi Liu. Wenhan's research focuses on equivariant neural networks, graph neural networks, and AI for partial differential equations. Wenhan's work seeks to leverage the power of symmetries to aid AI models, particularly in fields such as computer vision (image and video generation), physical simulation (modeling climate change), and computational chemistry (drug discovery). He has published papers on the aforementioned topics in leading venues like NeurIPS, Transactions on Machine Learning Research (TMLR), and Journal of Computational Physics (JCP). He also has several preprints under review in leading venues like ICLR and CVPR. In addition to his research, Wenhan has served as a reviewer for top-tier conferences, including ICLR, NeurIPS, ICML, and KDD, and as a lecturer for undergraduate and graduate courses at Stony Brook University. Wenhan was awarded the NeurIPS Travel Award and Excellence in Teaching for Fall 2023.