You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer over coffee and snacks for everyone to network and discuss all things AI. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.
Join us every other Tuesday at noon in CDSD's Training Room (building 725, 2nd floor) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.
Abstract: The increasing complexity and volume of data from electron microscopy necessitates advanced computational tools for timely and accurate analysis. In this talk, I will present several machine learning (ML) models developed to interpret diverse datasets from transmission electron microscopy (TEM). First, I demonstrate segmentation models for labelling regions of interest from in situ TEM images, such as atomic column positions or reaction sites that allow atomic-level quantitative analysis of data. Second, I introduce a self-supervised CNN model for denoising of low-dose HRTEM images, enabling clearer visualization of atomic features without sacrificing temporal resolution. Finally, a transformer-based model trained to predict copper oxidation states directly from their electron energy loss spectroscopy spectra will be introduced. Together, these projects showcase the power of tailored ML solutions to extract quantitative insights from complex microscopy data.
Biography: Brian Lee is a research associate working for the Electron Microscopy group and Theory and Computation group at the Center for Functional Nanomaterials. Previously, he has received PhD in Mechanical Engineering from Duke University and worked as a postdoc at Purdue University. His research focuses on applying machine learning and simulation techniques for materials science.
Location: CDS, Bldg. 725, Training Room
Join ZoomGov Meeting: https://bnl.zoomgov.com/j/1604383624?pwd=ffQ5cUPNxTI7nzClKQO6cnsNbhF9Vf.1
Meeting ID: 160 438 3624
Passcode: 558449
You are cordially invited to attend the biweekly Brookhaven AI Mixer (BAM). BAM includes one short talk on AI research happening at BNL, followed by an open mixer. The first half hour will consist of presentations that will be available via ZOOM, and the second half hour will be for in person only networking.
We meet every other Tuesday at noon in CDSD's Training Room (building 725, room 2-124) to learn about interesting AI methods and applications, engage with potential collaborators, prepare for pending FASST funding calls, and build a community of AI for Science at BNL.
In addition to our speaker, we will have a number of CDS staff in attendance with expertise in AI methods and applications including image analysis, foundation models development, and inverse problem solving.
AI-Driven Physics-Informed Phase Retrieval from a Single X-ray
Abstract: X-ray phase-contrast imaging enables the visualization of weakly absorbing or low-contrast structures and plays an important role in materials, biological, and energy research. Conventional X-ray holography and phase-retrieval techniques typically require multiple intensity measurements acquired at different propagation distances to recover phase information, increasing acquisition time, radiation dose, and experimental complexity. In this work, we present an AI-driven, physics-informed approach for phase retrieval using only a single X-ray intensity measurement. The method adapted a generative neural network as an inverse reconstruction engine, with physical models of X-ray wave propagation embedded directly into the optimization process. This allows phase and absorption information to be recovered from a single hologram without relying on paired, unpaired, or simulated training datasets. By combining physical constraints with self-supervised AI reconstruction, the approach achieves stable and quantitative results across a wide range of imaging conditions. The results demonstrate how physics-informed AI can reduce experimental requirements and enable data-efficient, automated phase retrieval for next-generation X-ray imaging workflows.
Biography: Xiaogang Yang is a computational scientist in the Data Analysis & Workflow Integration group at NSLS-II, focusing on AI development for X-ray imaging, data analysis, and automated workflows. He earned his PhD from Delft University of Technology, completed his postdoctoral research at Argonne National Laboratory, and previously held a tenured position at PETRA III (DESY).
Location: CDS, Bldg. 725, Training Room
Join ZoomGov Meeting: https://bnl.zoomgov.com/j/1604383624?pwd=ffQ5cUPNxTI7nzClKQO6cnsNbhF9Vf.1
Meeting ID: 160 438 3624
Passcode: 558449
Please Note: Due to a funding shortfall, we are for the time being no longer able to provide pizza and sodas for these events. We will have coffee though, and all are of course welcome to bring their lunch.
The Natural Language Processing Reading Group at Stony Brook University meets weekly to discuss recent research papers in NLP and related fields.
Join the Google Group here.
Topic: Responsible Artificial Intelligence: Promoting Health Equity for All
Speaker: Michael P. Cary, Jr., PhD, RN, FAAN.
Dr. Cary is a tenured Associate Professor at the Duke University School of Nursing. Dually trained as a health services researcher and applied health data scientist, Dr. Cary utilizes AI to investigate health disparities in aging populations, thereby promoting health equity and improving healthcare delivery. He co-directs HUMAINE™, an initiative dedicated to equipping nurses and healthcare professionals with the knowledge and skills necessary for the responsible use of AI in clinical practice.
Register: https://web.cvent.com/event/057978a5-a770-4de5-aca5-ad00287e4902/summary
Seminar Speaker: Dr. Mengyang Gu, Assistant Professor, Department of Statistics and Applied Probability, University of California, Santa Barbara
Abstract: In this talk, we introduce four useful tools for forward prediction and inversion estimation. The first tool is the parallel partial Gaussian process surrogate model for emulating expensive computer simulations with massive coordinates. The tool is implemented in the RobustGaSP package available in R, MATLAB, and Python, for predicting both scalar- and vector-valued outputs with uncertainty assessment. The second tool is implemented in the RobustCalibration package, which handles Bayesian data inversion or model calibration by one or multiple types of experimental observations. A unique feature of the package is the inclusion of fast surrogate models of both scalar- and vector-valued computer simulations that bypass the expensive simulation in one line of code. The third tool is implemented in the AIUQ package, available in both R and MATLAB. In this approach, we show that differential dynamic microscopy, a scattering-based analysis tool that extracts dynamical information from microscopy videos, is equivalent to fitting the temporal auto-covariance in Fourier space, based on a latent factor model we construct. We develop a more efficient estimator and reduce the computational cost to pseudolinear order with respect to the number of observations without approximation, by utilizing the generalized Schur algorithm for the Toeplitz covariance. In the last tool, we developed a new method called the inverse Kalman filter, which enables fast matrix-vector multiplication between a covariance matrix from a dynamic linear model and any real-valued vector with a linear computational cost. These new approaches outline a wide range of applications that include emulating expensive simulation at molecular-, meso- and macro-scales, active learning with error control, nonparametric estimation of particle interaction functions, and data inversion from microscopy and velocity fields.
Join Zoom Meeting: https://bnl.zoomgov.com/j/1606285496?pwd=2yJYSG6lx8gMPiibzgAIBQtKHIjuHV.1
Meeting ID: 160 628 5496
Passcode: 472506
- Techniques involving data driven inferences from multi-omics data
- Interdisciplinary approaches to uncover aspects of tumor biology
- Computational genomics method development, benchmarking, and validation
Speaker: Dr. Subhajyoti De, PhDProfessor, Cancer SystemsBiology and Pathology,Rutgers Cancer Institute,The State University of New Jersey
Location: MART Building, Room 7M-0602 (7th Floor)
Remote Access: https://stonybrook.zoom.us/j/95617197636?pwd=KytzZ2pVRG9SZGpKZUtpNXJISjNjZz09
Meeting ID: 95617197636 | Passcode: 924293
Academic Integrity and CELT invite faculty to an open discussion on managing the challenges of classroom technology and AI, handling misconduct suspicions and reports, and accessing resources like syllabus templates and recommended policy language. Our goal is to promote transparency about policies and procedures and empower faculty with easily accessible resources and strategies.
Register here to join.
The Department of AI and Society (AIS) at the University at Buffalo is hosting a two-day AI and Society Workshop focused on building AI systems by society, for society. This workshop brings together researchers and community organizers to explore how AI systems can be developed through meaningful collaboration across disciplines.
Topics include:
- Labor and AI
- Public services and AI
- Community-centered AI systems
- Intersections of humanities, social sciences, arts, and computing
The vision of UB's Department of AI and Society is to create a future where AI systems are built by society, for society. AIS centers community engagement at every stage of AI development through collaboration across disciplines and sectors. AIS was established with a $5 million grant from SUNY, and this workshop is made possible through that support.
Who Should Attend?
- Researchers
- Students
- Community organizers
- Practitioners interested in AI's societal impact