Time: May 5, 2022, Thursday, 02:00 PM Eastern Time (US and Canada)
Place: New Computer Science (NCS) Room 220, and Zoom

Zoom link: https://stonybrook.zoom.us/j/95948672934?pwd=d3ZDcUJkK3VweFBDVWhIVDhtaFU2Zz09
Meeting ID:  959 4867 2934
Passcode:  082036

Title:  Generative Adversarial Learning using Optimal Transport

Abstract: 

Generative Adversarial Learning (GAL) aims to learn a target distribution in an adversarial manner. A Generative Adversarial Network (GAN) is a concrete implementation of GAL using a discriminator and a generator that play a min-max game. GANs have been used in many machine learning and computer vision applications. However, GANs are known to be hard to train, mainly because a min-max saddle point optimization problem needs to be solved in GAL. In this thesis, I investigate several methods to improve generative adversarial learning using Optimal Transport (OT). 

Previous Wasserstein GANs (WGANs) do not compute the correct Wasserstein distance to train the discriminator. To address this problem, I propose WGAN-TS that uses the L1 transport cost and computes the correct Wasserstein distance to train the discriminator. To ensure the local convergence of WGANs, I propose WGAN-QC that adopts the quadratic transport cost. I prove that WGAN-QC not only computes the correct Wasserstein distance but also converges to a local equilibrium point. To compute the Wasserstein distance over the whole dataset, I propose to use Semi-Discrete Optimal Transport (SDOT) to match noise points and the real images during GAN training. To measure the quality of an SDOT map, I use the Maximum Relative Error (MRE) and the L_1 distance between the target distribution and the transported distribution obtained by an OT map. I propose statistical methods to estimate the MRE and the L_1 distance. I propose an efficient Epoch Gradient Descent algorithm for SDOT (SDOT-EGD). To deal with the 2D special case of GAL, I propose to use OT to learn 2D distributions. In particular, I adopt OT to match persistent diagrams in training a topology-aware GAN and learn density maps in the crowd counting task. Finally, I use OT and the topological maps of the crowd to improve the crowd counting performance and propose a topology-based metric to measure the quality of the crowd density maps.

Chat with Sociology faculty as they share their paths to StonyBrook-what inspired their careers, what led them to teaching,and the experiences that shaped their academic journey.

Dr. Yongjun Zhang

Assistant Professor of Sociology, Departments of Sociology and AAAS

Join this opportunity to talk to Yongjun Zhang about his new interest in the following responsible usage of AI in addressing climate and health issues. Lunch will be served.

Location: SBS Level 4- Sociology Reading Room

View more event information


The Provost's Office is excited to invite you to join in responding to an extraordinary opportunity to enhance our academic and research capabilities in AI at Stony Brook. SUNY recently made funding available to support the creation of departments of AI and Society at its universities. Stony Brook is well-positioned to seize this opportunity to build upon our interdisciplinary strengths in AI.

The office is hosting a forum on Friday, Nov. 15, from 11:30 a.m. to 1:30 p.m., in Ballroom A, SAC. You are invited to attend to learn more about this opportunity and to help us generate ideas to build a compelling proposal for Stony Brook to submit to SUNY. Lunch will be provided.

Please click here to RSVP as soon as possible.

This funding will support innovation in our curriculum, allowing us to create programs that explore the social and societal impact of AI alongside the technological advancements led by researchers in engineering and scientific disciplines.

We believe we can make a significant impact through this SUNY program and look forward to your participation in this initiative.




Time: 04/28 Wed 3pm-4pm

Remote Access
Join Zoom Meeting https://stonybrook.zoom.us/j/95617197636?pwd=KytzZ2pVRG9SZGpKZUtpNXJISjNjZz09 
Meeting ID: 956 1719 7636 Passcode: 924293

Title: Brain imaging genetics for Alzheimer's disease: integrated analysis and machine learning

Li Shen, Ph.D.
Professor of Informatics
Department of Biostatistics, Epidemiology and Informatics 
Perelman School of Medicine
University of Pennsylvania

Bio: Li Shen, Ph.D., is a Professor of Informatics in the Department of Biostatistics, Epidemiology and Informatics at the Perelman School of Medicine in the University of Pennsylvania. He is an elected fellow of the American Institute for Medical and Biological Engineering (AIMBE). He obtained his Ph.D. degree in Computer Science from Dartmouth College. The central theme of his lab is focused on developing computational and informatics methods for integrative analysis of multimodal imaging data, high throughput omics data, cognitive and other biomarker data, electronic health record (EHR) data, and rich biological knowledge such as pathways and networks, with applications to complex disorders. His research interests include medical image computing, biomedical informatics, machine learning, network science, imaging genomics, Alzheimer's disease, and big data science in biomedicine. He has authored over 280 peer-reviewed articles (h-index 57) in these fields. Dr. Shen's work has been continuously supported by the NIH and NSF, and he is presently the PI of multiple NIH and NSF grants on developing computational methods for various biomedical applications including brain imaging genomics, genetics of Alzheimer's disease, genetics of human connectome, mining drug effects from the EHR data, and big data mining in brain science. He is co-leading the NIA Alzheimer's Disease Sequencing Project AI4AD Consortium and oversees the imaging genomics aspect of this landmark project. Dr. Shen served as the Executive Director of the Medical Image Computing and Computer Assisted Intervention (MICCAI) Society Board of Directors during 2016-2019. He has chaired and co-chaired various professional meetings in medical image computing and bioinformatics. He is an Associate Editor of BioData Mining and Frontiers in Radiology (Section of AI in Radiology), and serves on the Editorial Board of Medical Image Analysis and Brain Imaging and Behavior.

Abstract: Brain imaging genetics is an emerging data science field, where integrated analysis of brain imaging and genetics data, often combined with other biomarker, clinical and environmental data, is performed to gain new insights into the genetic, molecular and phenotypic characteristics of the brain as well as their impact on normal and disordered brain function and behavior. Many methodological advances in brain imaging genetics are attributed to large-scale landmark biobank projects such as the Alzheimer's Disease Sequencing Project, the Alzheimer's Disease Neuroimaging Initiative, and the UK Biobank. Using the study of Alzheimer's disease as an example, we will discuss fundamental concepts, state-of-the-art statistical and machine learning methods, and innovative applications in this rapidly evolving field. We show that the wide availability of brain imaging genetics data from various large-scale biobanks, coupled with advances in biomedical statistics, informatics and computing, provides enormous opportunities to contribute significantly to biomedical discoveries in brain science and to impact the development of new diagnostic, therapeutic and preventative approaches for complex brain disorders such as Alzheimer's disease.

More details:
https://bmi.stonybrookmedicine.edu/sites/default/files/shen_li_04_28_flyer.pdf
The overall purpose of this seminar is to bring together people with interests in Computer Vision theory and techniques and to examine current research issues. This course will be appropriate for people who already took a Computer Vision graduate course or already had research experience in Computer Vision. To enroll in this course, you must either: (1) be in the PhD program or (2) receive permission from the instructors.

Each seminar will consist of multiple short talks (around 10 minutes) by multiple people. Students can register for 1 credit for CSE 656. Registered students must attend and present a minimum of 2 or 3 talks. Everyone else is welcome to attend. Fill in https://forms.gle/pCVXovgfMfQwGqG38 to subscribe to our mailing list for further announcement.
Abstract: Survival prediction using whole slide images (WSIs) can be formulated as a multiple instance learning (MIL) problem. However, existing MIL methods often fail to explicitly capture pathological heterogeneity within WSIs, both globally -- through long-tailed morphological distributions, and locally through -- tile-level prediction uncertainty. Optimal transport (OT) provides a principled way of modeling such heterogeneity by incorporating marginal distribution constraints. Building on this insight, we propose OTSurv, a novel MIL framework from an optimal transport perspective. Specifically, OTSurv formulates survival predictions as a heterogeneity-aware OT problem with two constraints: (1) global long-tail constraint that models prior morphological distributions to avert both mode collapse and excessive uniformity by regulating transport mass allocation, and (2) local uncertainty-aware constraint that prioritizes high-confidence patches while suppressing noise by progressively raising the total transport mass. We then recast the initial OT problem, augmented by these constraints, into an unbalanced OT formulation that can be solved with an efficient, hardware-friendly matrix scaling algorithm. Empirically, OTSurv sets new state-of-the-art results across six popular benchmarks, achieving an absolute 3.6% improvement in average C-index. In addition, OTSurv achieves statistical significance in log-rank tests and offers high interpretability, making it a powerful tool for survival prediction in digital pathology.

Speaker: Qin Ren

Location: https://stonybrook.zoom.us/j/97458849045?pwd=SREklaxa7EFhKaK6TeRXgQPH64vrQJ.1&jst=2
The INS (International Neuroethics Society) AI and Consciousness Affinity Group is hosting a talk titled Bringing Trustworthiness in Generative AI and Agentic AI Using Thought Knowledge Graphs featuring speaker Manas Gaur, a computer scientist at UMBC.
The talk will examine the interplay between Thought Knowledge Graphs (TKGs) and how they can form more trustworthy and reasoning-based responses in AI. They will also discuss introducing novel methods on implementing TKGs and their overall impact on creating more trustworthy AI systems.
The talk will be held online via Zoom on Monday, December 2 at 1:00pm (EST).
Register to attend.
Abstract: AI has achieved remarkable advancements in image recognition and natural language processing. However, its applications in Earth and environmental sciences are still emerging. Unprecedented data from satellites, sensors, and in-situ measurements oIers new opportunities to improve physics-based models and forecasts of environmental systems with AI and to gain deeper insights into these phenomena. Extreme systems, such as weather and climate events, pose distinct challenges for AI, such as limited sampling of rare events, non-trivial data augmentation, errors-in-variables, and complexities of transfer learning across diverse tasks. In this talk, we will explore some of these challenges and showcase AI architectures designed to address them. We will use specific examples of forecasting dust storms, precipitation extremes, flash floods, and drought events in the Middle East. Finally, we will discuss a different AI approach for studying sinkhole formation in the Dead Sea.

Speaker: Prof. Yinon Rudich, Department of Earth and Planetary Sciences, Weizmann Institute, Israel


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Passcode: cJjGQJqP

From instant question generation to automated data summaries, learn how to leverage Gemini to simplify your entire Google Forms workflow.

Discover how Gemini can now work in Google Forms. Start by creating a whole Google Form from a prompt. Then, watch the real magic after the data is in: We'll dive into Gemini's ability to analyze and summarize open-ended responses, turning a mountain of feedback into a concise, actionable information. Whether you're gathering student feedback or organizing departmental requests, this session will show you how to let AI do the busy work so you can focus on the results.

In this session, you will:

  1. Generate a Google Form from a prompt
  2. Get question suggestions
  3. Summarize text responses with AI

Register here.
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Meeting ID: 919 4522 7869
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