The Stony Brook Computing Society presents an exciting event featuring experts from Google (Danny Rosen - Technical Program Manager) and NVIDIA (Veer Mehta - Senior Solutions Architect), diving into the latest developments in generative AI. Learn how these industry leaders are shaping the future of technology and explore new ideas in a relaxed, engaging setting.

📍 Location: Frey 102
📅 Date: Monday, Nov 11
⏰ Time: 12 PM - 1:50 PM

Scan the QR code or register in the link.
Abstract: Foundation models brought a paradigm shift on representation learning and the deep learning community. In my talk, I will examine the role of foundation models in medical imaging, focusing on their potential to unify diverse tasks through large-scale, generalist architectures. While these models achieve strong performance, their deployment in healthcare raises challenges related to data limitations, privacy, validation, and trust. We will also discuss domain-specific models for imaging, along with efficient adaptation techniques to adapt such models on domains that they have not been trained on. The presentation will also address key issues of reliability and interpretability, highlighting approaches like conformal prediction and counterfactual intervention to improve uncertainty estimation and model transparency. Overall, the talk will emphasize that despite their promise, foundation models require robust evaluation and trustworthy design to ensure safe and effective use in clinical settings.

Speaker: Maria Vakalopoulou is an assistant professor (MCF) in applied mathematics at CentraleSupelec, University Paris Saclay in France and the group leader of the biomathematics group of MICS Laboratory focusing on mathematical modeling in Life Sciences. She is affliated with Inria Saclay in France and Archimedes Unit in Greece. Her main research interest include the development of computational methods for image perception focusing on earth observation and medical applications. Before that, she was a postdoctoral student at CentraleSupelec, where she worked with Nikos Paragios. She completed her PhD at the Remote Sensing Laboratory at the School of Rural, Surveying and Geo-Informatics Engineering of the National Technical University of Athens under the supervision of Konstantinos Karantzalos.

Location: NCS 220

Join the Department of Biomedical Informatics for an exclusive fall semester programming bootcamp. Discover essential programming, data analytics, and machine learning skills crucial for biomedical informatics. Special topics such as Bioinformatics and NLP will be briefly covered.

Gain hands-on programming experience and discover diverse career opportunities in biomedical informatics.

Don't miss this chance to excel in healthcare data analytics and shape the future of the industry.

https://bmi.stonybrookmedicine.edu/Bootcamp/Bootcamp-Fall-2025

Location: NCS 120


Abstract: Pre-trained diffusion and flow matching models have made visual generation remarkably powerful, enabling high-fidelity synthesis of images and videos from natural language prompts. However, their behavior is still largely dictated by the pre-training data distribution and likelihood objective, which do not directly encode downstream desiderata such as fine-grained semantic alignment, controllability, or realism. This gap motivates post-training: starting from a base generator and further optimizing it with additional supervision signals derived from human or reward model preferences.This work presents post-training for visual generative models through two complementary case studies. First, Hummingbird addresses the problem of fine-grained contextual alignment in image-text-to-image generation. We introduce a multimodal context evaluator that scores the consistency between rich contextual descriptions and generated images, capturing fine-grained alignment beyond global CLIP similarity. By directly backpropagating these differentiable rewards through the diffusion sampler, Hummingbird substantially improves semantic faithfulness while preserving high visual quality.
Second, PISCES tackles post-training for text-to-video generation, where alignment is inherently semantic-spatio-temporal. We show that naive VLM-based rewards suffer from distributional mismatch and token-level misalignment, leading to reward hacking and suboptimal optimization. PISCES introduces a bi-objective, Optimal Transport (OT)-aligned reward module: distributional OT using Neural Optimal Transport to align text and video embedding distributions, and discrete, partial OT over a spatio-temporal cost matrix to capture semantic alignment at the token level. These rewards are integrated into both direct backpropagation and GRPO-style optimization to post-train state-of-the-art text-to-video generators. Together, Hummingbird and PISCES provide a unified view of how carefully designed visual reward models, coupled with OT-based representation alignment, can reliably improve the downstream behavior of pre-trained image and video generators.

Speaker: Minh Quan Le

Location: NCS 220

Zoom: https://stonybrook.zoom.us/j/94798224254?pwd=CFraer25qnpORbJ14aAVHRwaSJOjJM.1
We live in a new scientific paradigm: the Big Data era, in which a lot of data is available for almost anything. In this new paradigm, the driving force is to use data directly to learn about chemical and physics systems employing artificial intelligence. This paradigm has proven helpful in simulating realistic physical, biological, and chemical models, yielding impressive results. Similarly, the insight gained in these situations can be used to improve our understanding of fundamental processes. In that regard, we want to answer the question: Can a machine learn chemistry? The answer to this question is still debatable, but we will show our ideas and methods to find the answer. We will also discuss our results on predicting atom-diatom reactions and other avenues and work in progress in our group.

Please register for the STEM Speaker Series: Can a Machine learn Chemistry here.

Description:

As artificial intelligence and data science reshape the global information landscape, libraries are emerging as key players in both technological innovation and ethical stewardship. This international Zoom discussion brings together library professionals and educators from the U.S., Philippines, and Hong Kong to explore how institutions are integrating AI and data into their pedagogy and services.

Panelists will share concrete examples from their own libraries--ranging from data literacy initiatives to increasing discoverability. The conversation will also examine regional trends in librarianship, spotlighting how institutions in Asia are navigating the evolving role of data and AI.

Join us for a global conversation that highlights the transformative potential of libraries as hubs for innovation and critical inquiry in the age of AI.

Register for this free Zoom panel.

Panelists:

Ahmad Pratama is a Faculty Member and Associate Librarian at Stony Brook University Libraries, where he is working to build a comprehensive, campus-wide data literacy program within the Libraries. As the Data Literacies Lead, his work focuses on empowering students, faculty, and staff to critically and ethically engage with data and AI, including the development of a credit-bearing course in Critical Data & AI Literacies supported by an EDGE Fund Award from the Provost's Office. Previously, Dr. Pratama served as an Associate Professor of Information Technology, and his research and teaching explore the intersections of technology, policy, and society with a focus on data, AI, and innovation in higher education.

Dan Anthony Dorado is a full-time faculty member at the U.P. School of Library and Information Studies, where he teaches information technology, management and marketing, research methodology, and quantitative research. He was also the director of the Diliman Learning Resource Center under the Office of the Vice Chancellor for Student Affairs. Before that, he was an Information Specialist at the College of Engineering Library, in charge of the System and Network Administration and The Learning Commons. He completed his master's degree at the Technology Management Center in U.P. Diliman and is currently pursuing his PhD in Data Science. As a member of Sync.Bio.Optics laboratory and the Publics, Archives, and Data (PANDA) Lab, his research specialization covers Computational Methods, Open Education, Critical Data Studies, and Radical Statistics.

Ryun LEE is Associate University Librarian at The Chinese University of Hong Kong Library, leading Digital Initiatives and Library IT and Systems. He drives digital innovation through emerging technologies, particularly artificial intelligence to enhance services, streamline operations, and support CUHK's mission in research, education, and knowledge advancement. With a background in cataloging and digital repository development, Ryun leads projects in digitization, OCR, data visualization, text and network analysis, GIS, and digital scholarship. He actively promotes knowledge graph applications in Hong Kong studies and oversees efforts to digitize and preserve resources related to Hong Kong and Southern China. His recent work focuses on creating seamless digital experiences and developing data-driven infrastructure. He is currently exploring AI-driven approaches to digitization workflows and entity extraction, aiming to improve access, discovery, and long-term preservation of library materials.

Abstract: Artificial intelligence (AI) is rapidly transforming scientific discovery, enabling breakthroughs in areas ranging from drug discovery to modeling complex physical systems. In the life sciences, AI has traditionally been applied to prediction tasks such as classifying molecules as toxic or non-toxic, estimating drug properties, or solving partial differential equations. These discriminative models have proven powerful, but they are inherently limited to mapping existing inputs to deterministic outputs. A new wave of methods is shifting the paradigm from discrimination to generation: creating new possibilities, such as generating novel molecules or designing new drugs. By reframing AI as both a predictive and generative engine, this shift offers new pathways for accelerating discovery and innovation in life sciences at an unprecedented scale. This talk will cover several aspects of AI for Science (AI4Sci), beginning with advances in discriminative models for molecular systems and solving PDEs, and then turning to generative approaches, including diffusion models for 3D molecular generation and large language models for drug editing. Together, these developments illustrate how moving from prediction to creation is redefining what AI can contribute to science.

Bio: Wenhan Gao is a fourth-year Ph.D. student in Applied Mathematics under the supervision of Professor Yi Liu. He was also a Staff Research Scientist Intern at VISA Research, where he worked on large language models (LLMs) and multi-agent systems for commerce. Wenhan's research focuses on AI for Science (AI4Sci), with a particular emphasis on generative AI. His work looks deep into the fundamental mechanisms of AI models when applied to scientific tasks, and he strives to incorporate established scientific priors, such as symmetry, into model design. He has published papers as a first or corresponding author in leading AI and computational venues, including ICLR, ICML, NeurIPS, TMLR, ACL, and the Journal of Computational Physics. In addition to his research, Wenhan has served as a reviewer and oral session chair for top AI conferences and as a lecturer for both undergraduate and graduate courses at Stony Brook University.

Location: IACS Seminar Room or Zoom

This seminar will take place in person and online*

Join Zoom Meeting: https://stonybrook.zoom.us/j/91670093552?pwd=2EcniXqPZLTpa4ZBKRs1zAjYqs1LS0.1

Meeting ID: 916 7009 3552
Passcode: 434045